Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.19■□□□□ 0.82
SHMT2P34897 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHMT2P34897 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.18■□□□□ 0.82
SHMT2P34897 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHMT2P34897 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHMT2P34897 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHMT2P34897 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.18■□□□□ 0.82
SHMT2P34897 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
SHMT2P34897 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHMT2P34897 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.18■□□□□ 0.82
SHMT2P34897 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHMT2P34897 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.18■□□□□ 0.82
SHMT2P34897 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHMT2P34897 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHMT2P34897 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
SHMT2P34897 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHMT2P34897 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHMT2P34897 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.18■□□□□ 0.82
SHMT2P34897 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.18■□□□□ 0.82
SHMT2P34897 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.18■□□□□ 0.82
SHMT2P34897 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHMT2P34897 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHMT2P34897 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
SHMT2P34897 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHMT2P34897 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHMT2P34897 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHMT2P34897 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHMT2P34897 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHMT2P34897 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.17■□□□□ 0.82
SHMT2P34897 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHMT2P34897 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHMT2P34897 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHMT2P34897 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SHMT2P34897 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.17■□□□□ 0.82
SHMT2P34897 AC006970.2-201ENST00000450065 779 ntBASIC20.17■□□□□ 0.82
SHMT2P34897 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.17■□□□□ 0.82
SHMT2P34897 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHMT2P34897 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHMT2P34897 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.17■□□□□ 0.82
SHMT2P34897 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHMT2P34897 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHMT2P34897 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.17■□□□□ 0.82
SHMT2P34897 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHMT2P34897 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHMT2P34897 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
SHMT2P34897 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SHMT2P34897 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHMT2P34897 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.16■□□□□ 0.82
SHMT2P34897 AC005181.1-201ENST00000604782 1256 ntBASIC20.16■□□□□ 0.82
SHMT2P34897 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.16■□□□□ 0.82
SHMT2P34897 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.16■□□□□ 0.82
SHMT2P34897 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.16■□□□□ 0.82
SHMT2P34897 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
SHMT2P34897 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHMT2P34897 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.16■□□□□ 0.82
SHMT2P34897 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SHMT2P34897 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SHMT2P34897 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHMT2P34897 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHMT2P34897 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHMT2P34897 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SHMT2P34897 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHMT2P34897 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.15■□□□□ 0.82
SHMT2P34897 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHMT2P34897 MIR663A-201ENST00000385250 93 ntBASIC20.15■□□□□ 0.82
SHMT2P34897 CROCCP5-201ENST00000436658 830 ntBASIC20.15■□□□□ 0.82
SHMT2P34897 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SHMT2P34897 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SHMT2P34897 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SHMT2P34897 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.15■□□□□ 0.82
SHMT2P34897 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.15■□□□□ 0.82
SHMT2P34897 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHMT2P34897 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SHMT2P34897 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
SHMT2P34897 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHMT2P34897 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
SHMT2P34897 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
SHMT2P34897 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SHMT2P34897 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
SHMT2P34897 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHMT2P34897 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.14■□□□□ 0.81
SHMT2P34897 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHMT2P34897 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.14■□□□□ 0.81
SHMT2P34897 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.14■□□□□ 0.81
SHMT2P34897 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SHMT2P34897 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.14■□□□□ 0.81
SHMT2P34897 AL162412.1-201ENST00000567129 965 ntBASIC20.14■□□□□ 0.81
SHMT2P34897 AL591742.1-201ENST00000604433 565 ntBASIC20.14■□□□□ 0.81
SHMT2P34897 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
SHMT2P34897 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHMT2P34897 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
SHMT2P34897 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.13■□□□□ 0.81
SHMT2P34897 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
SHMT2P34897 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
SHMT2P34897 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
SHMT2P34897 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SHMT2P34897 AC068338.2-201ENST00000563278 1430 ntBASIC20.13■□□□□ 0.81
SHMT2P34897 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
SHMT2P34897 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHMT2P34897 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms