Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
COL8A1P27658 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.07■□□□□ 0.48
COL8A1P27658 AP003071.4-201ENST00000562276 1284 ntBASIC18.07■□□□□ 0.48
COL8A1P27658 AC005363.2-201ENST00000618631 242 ntBASIC18.07■□□□□ 0.48
COL8A1P27658 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL8A1P27658 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
COL8A1P27658 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL8A1P27658 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL8A1P27658 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
COL8A1P27658 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.06■□□□□ 0.48
COL8A1P27658 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.06■□□□□ 0.48
COL8A1P27658 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
COL8A1P27658 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL8A1P27658 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.06■□□□□ 0.48
COL8A1P27658 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL8A1P27658 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
COL8A1P27658 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL8A1P27658 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL8A1P27658 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL8A1P27658 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.06■□□□□ 0.48
COL8A1P27658 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL8A1P27658 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL8A1P27658 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC18.06■□□□□ 0.48
COL8A1P27658 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL8A1P27658 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.06■□□□□ 0.48
COL8A1P27658 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL8A1P27658 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.05■□□□□ 0.48
COL8A1P27658 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
COL8A1P27658 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL8A1P27658 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC18.05■□□□□ 0.48
COL8A1P27658 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL8A1P27658 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
COL8A1P27658 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL8A1P27658 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL8A1P27658 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.05■□□□□ 0.48
COL8A1P27658 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.05■□□□□ 0.48
COL8A1P27658 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.05■□□□□ 0.48
COL8A1P27658 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
COL8A1P27658 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL8A1P27658 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL8A1P27658 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.05■□□□□ 0.48
COL8A1P27658 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL8A1P27658 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
COL8A1P27658 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC18.04■□□□□ 0.48
COL8A1P27658 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
COL8A1P27658 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
COL8A1P27658 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL8A1P27658 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL8A1P27658 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL8A1P27658 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL8A1P27658 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.04■□□□□ 0.48
COL8A1P27658 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.04■□□□□ 0.48
COL8A1P27658 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.04■□□□□ 0.48
COL8A1P27658 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.04■□□□□ 0.48
COL8A1P27658 AL121894.2-201ENST00000602977 491 ntBASIC18.04■□□□□ 0.48
COL8A1P27658 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL8A1P27658 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.04■□□□□ 0.48
COL8A1P27658 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL8A1P27658 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.04■□□□□ 0.48
COL8A1P27658 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL8A1P27658 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL8A1P27658 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL8A1P27658 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL8A1P27658 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL8A1P27658 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.03■□□□□ 0.48
COL8A1P27658 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
COL8A1P27658 LINC01124-201ENST00000409786 2117 ntBASIC18.03■□□□□ 0.48
COL8A1P27658 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.03■□□□□ 0.48
COL8A1P27658 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.03■□□□□ 0.48
COL8A1P27658 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.03■□□□□ 0.48
COL8A1P27658 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.03■□□□□ 0.48
COL8A1P27658 RARRES2P10-201ENST00000564312 460 ntBASIC18.03■□□□□ 0.48
COL8A1P27658 NTF6B-201ENST00000591913 560 ntBASIC18.03■□□□□ 0.48
COL8A1P27658 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.03■□□□□ 0.48
COL8A1P27658 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL8A1P27658 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.03■□□□□ 0.48
COL8A1P27658 AC012676.1-201ENST00000574705 1949 ntBASIC18.03■□□□□ 0.48
COL8A1P27658 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL8A1P27658 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC18.03■□□□□ 0.48
COL8A1P27658 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL8A1P27658 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL8A1P27658 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL8A1P27658 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL8A1P27658 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL8A1P27658 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.02■□□□□ 0.48
COL8A1P27658 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL8A1P27658 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.02■□□□□ 0.48
COL8A1P27658 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL8A1P27658 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL8A1P27658 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
COL8A1P27658 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL8A1P27658 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL8A1P27658 AL355355.2-201ENST00000442321 338 ntBASIC18.02■□□□□ 0.48
COL8A1P27658 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL8A1P27658 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL8A1P27658 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.02■□□□□ 0.48
COL8A1P27658 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.02■□□□□ 0.48
COL8A1P27658 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.02■□□□□ 0.48
COL8A1P27658 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.02■□□□□ 0.48
COL8A1P27658 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms