Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
LIMS3P0CW19 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMS3P0CW19 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMS3P0CW19 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.33■□□□□ 0.52
LIMS3P0CW19 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMS3P0CW19 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
LIMS3P0CW19 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LIMS3P0CW19 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMS3P0CW19 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LIMS3P0CW19 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
LIMS3P0CW19 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.32■□□□□ 0.52
LIMS3P0CW19 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMS3P0CW19 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMS3P0CW19 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMS3P0CW19 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMS3P0CW19 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMS3P0CW19 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
LIMS3P0CW19 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMS3P0CW19 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LIMS3P0CW19 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.32■□□□□ 0.52
LIMS3P0CW19 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMS3P0CW19 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMS3P0CW19 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.31■□□□□ 0.52
LIMS3P0CW19 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMS3P0CW19 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
LIMS3P0CW19 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LIMS3P0CW19 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMS3P0CW19 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.31■□□□□ 0.52
LIMS3P0CW19 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMS3P0CW19 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.31■□□□□ 0.52
LIMS3P0CW19 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.31■□□□□ 0.52
LIMS3P0CW19 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC18.31■□□□□ 0.52
LIMS3P0CW19 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.31■□□□□ 0.52
LIMS3P0CW19 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMS3P0CW19 AC092720.2-201ENST00000602388 1665 ntBASIC18.31■□□□□ 0.52
LIMS3P0CW19 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.31■□□□□ 0.52
LIMS3P0CW19 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.31■□□□□ 0.52
LIMS3P0CW19 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LIMS3P0CW19 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMS3P0CW19 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMS3P0CW19 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMS3P0CW19 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.3■□□□□ 0.52
LIMS3P0CW19 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.3■□□□□ 0.52
LIMS3P0CW19 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.3■□□□□ 0.52
LIMS3P0CW19 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMS3P0CW19 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMS3P0CW19 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMS3P0CW19 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.3■□□□□ 0.52
LIMS3P0CW19 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
LIMS3P0CW19 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIMS3P0CW19 SRR-208ENST00000576848 588 ntTSL 4 BASIC18.3■□□□□ 0.52
LIMS3P0CW19 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.3■□□□□ 0.52
LIMS3P0CW19 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIMS3P0CW19 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMS3P0CW19 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.3■□□□□ 0.52
LIMS3P0CW19 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMS3P0CW19 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMS3P0CW19 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.3■□□□□ 0.52
LIMS3P0CW19 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMS3P0CW19 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
LIMS3P0CW19 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIMS3P0CW19 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
LIMS3P0CW19 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.29■□□□□ 0.52
LIMS3P0CW19 AC005224.4-201ENST00000583262 1652 ntBASIC18.29■□□□□ 0.52
LIMS3P0CW19 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LIMS3P0CW19 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIMS3P0CW19 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
LIMS3P0CW19 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIMS3P0CW19 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC18.29■□□□□ 0.52
LIMS3P0CW19 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LIMS3P0CW19 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC18.29■□□□□ 0.52
LIMS3P0CW19 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC18.29■□□□□ 0.52
LIMS3P0CW19 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC18.29■□□□□ 0.52
LIMS3P0CW19 AC125437.2-201ENST00000625180 2167 ntBASIC18.29■□□□□ 0.52
LIMS3P0CW19 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.29■□□□□ 0.52
LIMS3P0CW19 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIMS3P0CW19 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIMS3P0CW19 AL020996.1-203ENST00000536896 2307 ntBASIC18.29■□□□□ 0.52
LIMS3P0CW19 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIMS3P0CW19 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LIMS3P0CW19 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIMS3P0CW19 AC116562.4-201ENST00000641316 2276 ntBASIC18.29■□□□□ 0.52
LIMS3P0CW19 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIMS3P0CW19 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.29■□□□□ 0.52
LIMS3P0CW19 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.29■□□□□ 0.52
LIMS3P0CW19 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIMS3P0CW19 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIMS3P0CW19 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
LIMS3P0CW19 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIMS3P0CW19 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIMS3P0CW19 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIMS3P0CW19 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIMS3P0CW19 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LIMS3P0CW19 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LIMS3P0CW19 BX842568.3-201ENST00000418104 571 ntBASIC18.28■□□□□ 0.52
LIMS3P0CW19 AL035685.1-201ENST00000636663 812 ntBASIC18.28■□□□□ 0.52
LIMS3P0CW19 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIMS3P0CW19 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIMS3P0CW19 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIMS3P0CW19 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms