Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A2P08572 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A2P08572 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A2P08572 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A2P08572 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.01■□□□□ 0.95
COL4A2P08572 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A2P08572 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
COL4A2P08572 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.01■□□□□ 0.95
COL4A2P08572 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.01■□□□□ 0.95
COL4A2P08572 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC21.01■□□□□ 0.95
COL4A2P08572 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A2P08572 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21■□□□□ 0.95
COL4A2P08572 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL4A2P08572 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21■□□□□ 0.95
COL4A2P08572 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21■□□□□ 0.95
COL4A2P08572 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL4A2P08572 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
COL4A2P08572 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL4A2P08572 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL4A2P08572 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A2P08572 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.99■□□□□ 0.95
COL4A2P08572 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
COL4A2P08572 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
COL4A2P08572 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A2P08572 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A2P08572 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.99■□□□□ 0.95
COL4A2P08572 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A2P08572 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
COL4A2P08572 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.99■□□□□ 0.95
COL4A2P08572 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
COL4A2P08572 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A2P08572 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A2P08572 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A2P08572 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.99■□□□□ 0.95
COL4A2P08572 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A2P08572 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A2P08572 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A2P08572 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
COL4A2P08572 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.98■□□□□ 0.95
COL4A2P08572 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A2P08572 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A2P08572 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A2P08572 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.98■□□□□ 0.95
COL4A2P08572 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.98■□□□□ 0.95
COL4A2P08572 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.98■□□□□ 0.95
COL4A2P08572 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.98■□□□□ 0.95
COL4A2P08572 AC113410.3-201ENST00000623366 203 ntBASIC20.98■□□□□ 0.95
COL4A2P08572 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A2P08572 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
COL4A2P08572 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A2P08572 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
COL4A2P08572 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
COL4A2P08572 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A2P08572 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL4A2P08572 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.98■□□□□ 0.95
COL4A2P08572 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
COL4A2P08572 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.97■□□□□ 0.95
COL4A2P08572 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A2P08572 C1orf229-201ENST00000623686 2258 ntBASIC20.97■□□□□ 0.95
COL4A2P08572 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A2P08572 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A2P08572 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A2P08572 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A2P08572 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
COL4A2P08572 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
COL4A2P08572 KRASP1-201ENST00000407852 552 ntBASIC20.97■□□□□ 0.95
COL4A2P08572 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.97■□□□□ 0.95
COL4A2P08572 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A2P08572 AC005829.2-201ENST00000571422 1056 ntBASIC20.97■□□□□ 0.95
COL4A2P08572 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
COL4A2P08572 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL4A2P08572 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A2P08572 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A2P08572 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A2P08572 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A2P08572 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A2P08572 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.96■□□□□ 0.95
COL4A2P08572 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A2P08572 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
COL4A2P08572 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.96■□□□□ 0.95
COL4A2P08572 FAM210CP-201ENST00000445714 574 ntBASIC20.96■□□□□ 0.95
COL4A2P08572 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A2P08572 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
COL4A2P08572 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
COL4A2P08572 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.96■□□□□ 0.95
COL4A2P08572 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
COL4A2P08572 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
COL4A2P08572 AC211429.1-201ENST00000415277 523 ntBASIC20.95■□□□□ 0.94
COL4A2P08572 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A2P08572 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.95■□□□□ 0.94
COL4A2P08572 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.95■□□□□ 0.94
COL4A2P08572 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.95■□□□□ 0.94
COL4A2P08572 AC012306.2-201ENST00000609350 630 ntBASIC20.95■□□□□ 0.94
COL4A2P08572 AC010331.1-201ENST00000611423 582 ntBASIC20.95■□□□□ 0.94
COL4A2P08572 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.95■□□□□ 0.94
COL4A2P08572 AL023875.1-201ENST00000640777 796 ntBASIC20.95■□□□□ 0.94
COL4A2P08572 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A2P08572 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A2P08572 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
COL4A2P08572 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms