Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AC092667.1-201ENST00000434301 2586 ntBASIC19.94■□□□□ 0.78
CLDN9O95484 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLDN9O95484 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLDN9O95484 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLDN9O95484 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLDN9O95484 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.94■□□□□ 0.78
CLDN9O95484 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLDN9O95484 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.94■□□□□ 0.78
CLDN9O95484 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.94■□□□□ 0.78
CLDN9O95484 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLDN9O95484 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.94■□□□□ 0.78
CLDN9O95484 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.93■□□□□ 0.78
CLDN9O95484 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN9O95484 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN9O95484 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN9O95484 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN9O95484 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN9O95484 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN9O95484 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN9O95484 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN9O95484 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN9O95484 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.93■□□□□ 0.78
CLDN9O95484 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN9O95484 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.93■□□□□ 0.78
CLDN9O95484 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
CLDN9O95484 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
CLDN9O95484 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN9O95484 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
CLDN9O95484 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.93■□□□□ 0.78
CLDN9O95484 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
CLDN9O95484 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN9O95484 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN9O95484 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN9O95484 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN9O95484 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN9O95484 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
CLDN9O95484 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN9O95484 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.92■□□□□ 0.78
CLDN9O95484 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN9O95484 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CLDN9O95484 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.92■□□□□ 0.78
CLDN9O95484 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.92■□□□□ 0.78
CLDN9O95484 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.92■□□□□ 0.78
CLDN9O95484 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.92■□□□□ 0.78
CLDN9O95484 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN9O95484 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
CLDN9O95484 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.91■□□□□ 0.78
CLDN9O95484 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN9O95484 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN9O95484 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN9O95484 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN9O95484 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN9O95484 AC027702.1-201ENST00000563810 1770 ntBASIC19.91■□□□□ 0.78
CLDN9O95484 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN9O95484 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN9O95484 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN9O95484 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN9O95484 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN9O95484 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.91■□□□□ 0.78
CLDN9O95484 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.91■□□□□ 0.78
CLDN9O95484 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.91■□□□□ 0.78
CLDN9O95484 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.91■□□□□ 0.78
CLDN9O95484 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN9O95484 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN9O95484 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.91■□□□□ 0.78
CLDN9O95484 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
CLDN9O95484 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.91■□□□□ 0.78
CLDN9O95484 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CLDN9O95484 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
CLDN9O95484 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN9O95484 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN9O95484 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.91■□□□□ 0.78
CLDN9O95484 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.91■□□□□ 0.78
CLDN9O95484 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CLDN9O95484 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN9O95484 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN9O95484 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN9O95484 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN9O95484 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN9O95484 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN9O95484 KRT19P1-201ENST00000405746 1186 ntBASIC19.9■□□□□ 0.78
CLDN9O95484 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.9■□□□□ 0.78
CLDN9O95484 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN9O95484 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN9O95484 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN9O95484 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN9O95484 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.9■□□□□ 0.78
CLDN9O95484 AC116050.2-201ENST00000612102 1779 ntBASIC19.9■□□□□ 0.78
CLDN9O95484 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.9■□□□□ 0.78
CLDN9O95484 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN9O95484 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN9O95484 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN9O95484 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN9O95484 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN9O95484 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN9O95484 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.89■□□□□ 0.77
CLDN9O95484 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN9O95484 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CLDN9O95484 SLC7A5P1-201ENST00000568957 537 ntBASIC19.89■□□□□ 0.77
CLDN9O95484 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms