Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
USH2AO75445 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC9.32□□□□□ -0.92
USH2AO75445 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
USH2AO75445 AC005829.2-201ENST00000571422 1056 ntBASIC9.32□□□□□ -0.92
USH2AO75445 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC9.32□□□□□ -0.92
USH2AO75445 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC9.32□□□□□ -0.92
USH2AO75445 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC9.32□□□□□ -0.92
USH2AO75445 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
USH2AO75445 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC9.32□□□□□ -0.92
USH2AO75445 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC9.32□□□□□ -0.92
USH2AO75445 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
USH2AO75445 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC9.32□□□□□ -0.92
USH2AO75445 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC9.32□□□□□ -0.92
USH2AO75445 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
USH2AO75445 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC9.32□□□□□ -0.92
USH2AO75445 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC9.32□□□□□ -0.92
USH2AO75445 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC9.32□□□□□ -0.92
USH2AO75445 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC9.32□□□□□ -0.92
USH2AO75445 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC9.32□□□□□ -0.92
USH2AO75445 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC9.32□□□□□ -0.92
USH2AO75445 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
USH2AO75445 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC9.32□□□□□ -0.92
USH2AO75445 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC9.32□□□□□ -0.92
USH2AO75445 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
USH2AO75445 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
USH2AO75445 COPE-203ENST00000351079 907 ntTSL 2 BASIC9.32□□□□□ -0.92
USH2AO75445 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC9.32□□□□□ -0.92
USH2AO75445 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
USH2AO75445 AC073195.1-201ENST00000607241 877 ntBASIC9.32□□□□□ -0.92
USH2AO75445 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
USH2AO75445 AC004812.2-201ENST00000611079 2094 ntBASIC9.32□□□□□ -0.92
USH2AO75445 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
USH2AO75445 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
USH2AO75445 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
USH2AO75445 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC9.31□□□□□ -0.92
USH2AO75445 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
USH2AO75445 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC9.31□□□□□ -0.92
USH2AO75445 LGALS8-AS1-201ENST00000487567 1457 ntBASIC9.31□□□□□ -0.92
USH2AO75445 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC9.31□□□□□ -0.92
USH2AO75445 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
USH2AO75445 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
USH2AO75445 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC9.31□□□□□ -0.92
USH2AO75445 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC9.31□□□□□ -0.92
USH2AO75445 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC9.31□□□□□ -0.92
USH2AO75445 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC9.31□□□□□ -0.92
USH2AO75445 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC9.31□□□□□ -0.92
USH2AO75445 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC9.31□□□□□ -0.92
USH2AO75445 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC9.31□□□□□ -0.92
USH2AO75445 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
USH2AO75445 FDX1P1-201ENST00000449115 551 ntBASIC9.31□□□□□ -0.92
USH2AO75445 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC9.31□□□□□ -0.92
USH2AO75445 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC9.31□□□□□ -0.92
USH2AO75445 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC9.31□□□□□ -0.92
USH2AO75445 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
USH2AO75445 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC9.31□□□□□ -0.92
USH2AO75445 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC9.3□□□□□ -0.92
USH2AO75445 AC120498.10-201ENST00000621827 505 ntBASIC9.3□□□□□ -0.92
USH2AO75445 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC9.3□□□□□ -0.92
USH2AO75445 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC9.3□□□□□ -0.92
USH2AO75445 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
USH2AO75445 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
USH2AO75445 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC9.3□□□□□ -0.92
USH2AO75445 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC9.3□□□□□ -0.92
USH2AO75445 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC9.3□□□□□ -0.92
USH2AO75445 LTBR-211ENST00000543190 785 ntTSL 3 BASIC9.3□□□□□ -0.92
USH2AO75445 AL034346.1-201ENST00000568244 1277 ntBASIC9.3□□□□□ -0.92
USH2AO75445 FAM87A-204ENST00000613235 858 ntBASIC9.3□□□□□ -0.92
USH2AO75445 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC9.3□□□□□ -0.92
USH2AO75445 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC9.3□□□□□ -0.92
USH2AO75445 CLN6-214ENST00000636314 442 ntTSL 3 BASIC9.3□□□□□ -0.92
USH2AO75445 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC9.3□□□□□ -0.92
USH2AO75445 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC9.3□□□□□ -0.92
USH2AO75445 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
USH2AO75445 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
USH2AO75445 MED25-212ENST00000618715 1467 ntTSL 5 BASIC9.3□□□□□ -0.92
USH2AO75445 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
USH2AO75445 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
USH2AO75445 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
USH2AO75445 AC008175.2-201ENST00000612840 297 ntBASIC9.3□□□□□ -0.92
USH2AO75445 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC9.3□□□□□ -0.92
USH2AO75445 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
USH2AO75445 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
USH2AO75445 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
USH2AO75445 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
USH2AO75445 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
USH2AO75445 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC9.3□□□□□ -0.92
USH2AO75445 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC9.3□□□□□ -0.92
USH2AO75445 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC9.3□□□□□ -0.92
USH2AO75445 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC9.3□□□□□ -0.92
USH2AO75445 SAPCD2P2-201ENST00000431719 1174 ntBASIC9.3□□□□□ -0.92
USH2AO75445 AL355355.2-201ENST00000442321 338 ntBASIC9.3□□□□□ -0.92
USH2AO75445 HCG4P8-203ENST00000443049 980 ntBASIC9.3□□□□□ -0.92
USH2AO75445 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC9.3□□□□□ -0.92
USH2AO75445 NAPSB-206ENST00000562112 1266 ntBASIC9.3□□□□□ -0.92
USH2AO75445 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
USH2AO75445 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC9.3□□□□□ -0.92
USH2AO75445 FDX2-207ENST00000494368 584 ntTSL 4 BASIC9.29□□□□□ -0.92
USH2AO75445 AC243732.1-201ENST00000612648 864 ntBASIC9.29□□□□□ -0.92
USH2AO75445 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC9.29□□□□□ -0.92
USH2AO75445 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC9.29□□□□□ -0.92
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms