Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.11■□□□□ 0.49
LMX1BO60663 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
LMX1BO60663 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1BO60663 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
LMX1BO60663 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
LMX1BO60663 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC18.1■□□□□ 0.49
LMX1BO60663 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.1■□□□□ 0.49
LMX1BO60663 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
LMX1BO60663 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1BO60663 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1BO60663 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1BO60663 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1BO60663 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1BO60663 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.1■□□□□ 0.49
LMX1BO60663 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1BO60663 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
LMX1BO60663 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
LMX1BO60663 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
LMX1BO60663 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.1■□□□□ 0.49
LMX1BO60663 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.1■□□□□ 0.49
LMX1BO60663 AC006970.2-201ENST00000450065 779 ntBASIC18.1■□□□□ 0.49
LMX1BO60663 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.1■□□□□ 0.49
LMX1BO60663 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
LMX1BO60663 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
LMX1BO60663 KRT18P61-201ENST00000585825 1298 ntBASIC18.1■□□□□ 0.49
LMX1BO60663 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.1■□□□□ 0.49
LMX1BO60663 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1BO60663 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1BO60663 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1BO60663 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1BO60663 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1BO60663 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1BO60663 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1BO60663 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.09■□□□□ 0.49
LMX1BO60663 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1BO60663 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1BO60663 AC121338.2-201ENST00000622535 1744 ntBASIC18.09■□□□□ 0.49
LMX1BO60663 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
LMX1BO60663 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1BO60663 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1BO60663 BX005040.4-201ENST00000637145 1518 ntBASIC18.09■□□□□ 0.49
LMX1BO60663 AP004607.4-201ENST00000530158 1459 ntBASIC18.09■□□□□ 0.49
LMX1BO60663 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1BO60663 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
LMX1BO60663 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.09■□□□□ 0.49
LMX1BO60663 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.09■□□□□ 0.49
LMX1BO60663 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1BO60663 KRT19P1-201ENST00000405746 1186 ntBASIC18.09■□□□□ 0.49
LMX1BO60663 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1BO60663 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.09■□□□□ 0.49
LMX1BO60663 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.09■□□□□ 0.49
LMX1BO60663 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.09■□□□□ 0.49
LMX1BO60663 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.09■□□□□ 0.49
LMX1BO60663 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
LMX1BO60663 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1BO60663 AP005212.1-201ENST00000581547 1997 ntBASIC18.09■□□□□ 0.49
LMX1BO60663 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1BO60663 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1BO60663 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
LMX1BO60663 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1BO60663 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1BO60663 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1BO60663 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1BO60663 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1BO60663 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
LMX1BO60663 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1BO60663 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LMX1BO60663 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
LMX1BO60663 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LMX1BO60663 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LMX1BO60663 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.08■□□□□ 0.48
LMX1BO60663 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.08■□□□□ 0.48
LMX1BO60663 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LMX1BO60663 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
LMX1BO60663 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
LMX1BO60663 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1BO60663 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1BO60663 AC004854.2-201ENST00000608450 1441 ntBASIC18.07■□□□□ 0.48
LMX1BO60663 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
LMX1BO60663 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.07■□□□□ 0.48
LMX1BO60663 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.07■□□□□ 0.48
LMX1BO60663 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.07■□□□□ 0.48
LMX1BO60663 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1BO60663 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
LMX1BO60663 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
LMX1BO60663 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1BO60663 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.07■□□□□ 0.48
LMX1BO60663 AC104771.1-201ENST00000603335 964 ntBASIC18.07■□□□□ 0.48
LMX1BO60663 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1BO60663 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1BO60663 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1BO60663 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1BO60663 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1BO60663 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1BO60663 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1BO60663 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1BO60663 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.07■□□□□ 0.48
LMX1BO60663 PCDHAC2-203ENST00000615316 3011 ntBASIC18.07■□□□□ 0.48
LMX1BO60663 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
LMX1BO60663 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms