Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PHGDHO43175 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.49■□□□□ 0.87
PHGDHO43175 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.49■□□□□ 0.87
PHGDHO43175 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
PHGDHO43175 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PHGDHO43175 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.49■□□□□ 0.87
PHGDHO43175 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PHGDHO43175 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.49■□□□□ 0.87
PHGDHO43175 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PHGDHO43175 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
PHGDHO43175 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
PHGDHO43175 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PHGDHO43175 AC020907.5-201ENST00000624372 1936 ntBASIC20.49■□□□□ 0.87
PHGDHO43175 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PHGDHO43175 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PHGDHO43175 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
PHGDHO43175 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PHGDHO43175 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.48■□□□□ 0.87
PHGDHO43175 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PHGDHO43175 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PHGDHO43175 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PHGDHO43175 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PHGDHO43175 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
PHGDHO43175 POU5F1P4-201ENST00000413175 1085 ntBASIC20.48■□□□□ 0.87
PHGDHO43175 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PHGDHO43175 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PHGDHO43175 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.48■□□□□ 0.87
PHGDHO43175 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PHGDHO43175 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PHGDHO43175 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PHGDHO43175 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PHGDHO43175 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.48■□□□□ 0.87
PHGDHO43175 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PHGDHO43175 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PHGDHO43175 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
PHGDHO43175 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PHGDHO43175 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PHGDHO43175 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PHGDHO43175 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
PHGDHO43175 AC027612.3-201ENST00000413684 1047 ntBASIC20.47■□□□□ 0.87
PHGDHO43175 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
PHGDHO43175 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PHGDHO43175 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.47■□□□□ 0.87
PHGDHO43175 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PHGDHO43175 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PHGDHO43175 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.47■□□□□ 0.87
PHGDHO43175 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PHGDHO43175 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PHGDHO43175 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PHGDHO43175 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PHGDHO43175 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.46■□□□□ 0.87
PHGDHO43175 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PHGDHO43175 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.46■□□□□ 0.87
PHGDHO43175 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PHGDHO43175 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
PHGDHO43175 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
PHGDHO43175 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PHGDHO43175 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
PHGDHO43175 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PHGDHO43175 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
PHGDHO43175 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.46■□□□□ 0.87
PHGDHO43175 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PHGDHO43175 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.46■□□□□ 0.87
PHGDHO43175 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
PHGDHO43175 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PHGDHO43175 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PHGDHO43175 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PHGDHO43175 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.46■□□□□ 0.87
PHGDHO43175 AC138907.5-202ENST00000569484 235 ntBASIC20.46■□□□□ 0.87
PHGDHO43175 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PHGDHO43175 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.46■□□□□ 0.87
PHGDHO43175 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PHGDHO43175 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.46■□□□□ 0.87
PHGDHO43175 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PHGDHO43175 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.46■□□□□ 0.87
PHGDHO43175 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PHGDHO43175 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PHGDHO43175 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PHGDHO43175 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.45■□□□□ 0.87
PHGDHO43175 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
PHGDHO43175 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
PHGDHO43175 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.45■□□□□ 0.86
PHGDHO43175 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
PHGDHO43175 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
PHGDHO43175 MIR638-201ENST00000385237 100 ntBASIC20.45■□□□□ 0.86
PHGDHO43175 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.45■□□□□ 0.86
PHGDHO43175 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PHGDHO43175 RARRES2P11-201ENST00000635158 484 ntBASIC20.45■□□□□ 0.86
PHGDHO43175 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PHGDHO43175 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.45■□□□□ 0.86
PHGDHO43175 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
PHGDHO43175 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
PHGDHO43175 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
PHGDHO43175 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PHGDHO43175 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PHGDHO43175 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.44■□□□□ 0.86
PHGDHO43175 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.44■□□□□ 0.86
PHGDHO43175 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PHGDHO43175 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PHGDHO43175 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms