Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC3O15379 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC3O15379 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
HDAC3O15379 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC3O15379 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
HDAC3O15379 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HDAC3O15379 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.05■□□□□ 0.8
HDAC3O15379 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.05■□□□□ 0.8
HDAC3O15379 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
HDAC3O15379 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.05■□□□□ 0.8
HDAC3O15379 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HDAC3O15379 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HDAC3O15379 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.05■□□□□ 0.8
HDAC3O15379 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.05■□□□□ 0.8
HDAC3O15379 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
HDAC3O15379 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HDAC3O15379 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.05■□□□□ 0.8
HDAC3O15379 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.05■□□□□ 0.8
HDAC3O15379 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HDAC3O15379 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.05■□□□□ 0.8
HDAC3O15379 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HDAC3O15379 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HDAC3O15379 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HDAC3O15379 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HDAC3O15379 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.05■□□□□ 0.8
HDAC3O15379 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
HDAC3O15379 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.05■□□□□ 0.8
HDAC3O15379 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
HDAC3O15379 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC3O15379 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.04■□□□□ 0.8
HDAC3O15379 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.04■□□□□ 0.8
HDAC3O15379 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC3O15379 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC3O15379 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC3O15379 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC3O15379 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC3O15379 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC3O15379 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC3O15379 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.04■□□□□ 0.8
HDAC3O15379 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.04■□□□□ 0.8
HDAC3O15379 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.04■□□□□ 0.8
HDAC3O15379 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.04■□□□□ 0.8
HDAC3O15379 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
HDAC3O15379 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
HDAC3O15379 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC3O15379 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC3O15379 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC3O15379 AP004607.4-201ENST00000530158 1459 ntBASIC20.04■□□□□ 0.8
HDAC3O15379 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
HDAC3O15379 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC3O15379 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
HDAC3O15379 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDAC3O15379 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC3O15379 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC3O15379 RNF165-205ENST00000588679 2904 ntBASIC20.03■□□□□ 0.8
HDAC3O15379 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
HDAC3O15379 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.03■□□□□ 0.8
HDAC3O15379 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC3O15379 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.03■□□□□ 0.8
HDAC3O15379 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC3O15379 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.03■□□□□ 0.8
HDAC3O15379 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC3O15379 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC3O15379 AC105233.4-201ENST00000642045 216 ntBASIC20.03■□□□□ 0.8
HDAC3O15379 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC3O15379 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC3O15379 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC3O15379 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC3O15379 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC3O15379 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC3O15379 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.03■□□□□ 0.8
HDAC3O15379 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC3O15379 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDAC3O15379 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.02■□□□□ 0.8
HDAC3O15379 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HDAC3O15379 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
HDAC3O15379 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
HDAC3O15379 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.02■□□□□ 0.8
HDAC3O15379 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.02■□□□□ 0.8
HDAC3O15379 EEF1DP3-203ENST00000566025 782 ntBASIC20.02■□□□□ 0.8
HDAC3O15379 AC053503.5-201ENST00000601508 636 ntBASIC20.02■□□□□ 0.8
HDAC3O15379 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.02■□□□□ 0.8
HDAC3O15379 AC092720.2-201ENST00000602388 1665 ntBASIC20.02■□□□□ 0.8
HDAC3O15379 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
HDAC3O15379 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HDAC3O15379 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HDAC3O15379 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
HDAC3O15379 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
HDAC3O15379 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
HDAC3O15379 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
HDAC3O15379 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC3O15379 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC3O15379 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC3O15379 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC3O15379 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC3O15379 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC3O15379 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC3O15379 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC3O15379 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.01■□□□□ 0.79
HDAC3O15379 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms