Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
HMGB3O15347 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB3O15347 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGB3O15347 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB3O15347 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB3O15347 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC16.59■□□□□ 0.25
HMGB3O15347 AC079089.2-201ENST00000531211 1277 ntBASIC16.59■□□□□ 0.25
HMGB3O15347 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
HMGB3O15347 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
HMGB3O15347 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGB3O15347 OR7E47P-201ENST00000546390 1422 ntBASIC16.59■□□□□ 0.25
HMGB3O15347 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB3O15347 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB3O15347 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
HMGB3O15347 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC16.58■□□□□ 0.25
HMGB3O15347 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
HMGB3O15347 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGB3O15347 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC16.58■□□□□ 0.25
HMGB3O15347 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGB3O15347 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGB3O15347 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
HMGB3O15347 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
HMGB3O15347 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB3O15347 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB3O15347 AC074183.2-201ENST00000623112 922 ntBASIC16.58■□□□□ 0.24
HMGB3O15347 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB3O15347 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB3O15347 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB3O15347 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
HMGB3O15347 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
HMGB3O15347 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC16.58■□□□□ 0.24
HMGB3O15347 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB3O15347 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC16.58■□□□□ 0.24
HMGB3O15347 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB3O15347 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB3O15347 PALM-207ENST00000590161 2137 ntTSL 4 BASIC16.58■□□□□ 0.24
HMGB3O15347 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
HMGB3O15347 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
HMGB3O15347 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
HMGB3O15347 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
HMGB3O15347 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB3O15347 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB3O15347 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB3O15347 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB3O15347 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB3O15347 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB3O15347 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB3O15347 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGB3O15347 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB3O15347 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
HMGB3O15347 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGB3O15347 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB3O15347 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB3O15347 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC16.57■□□□□ 0.24
HMGB3O15347 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HMGB3O15347 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC16.57■□□□□ 0.24
HMGB3O15347 MIR6722-201ENST00000617286 78 ntBASIC16.57■□□□□ 0.24
HMGB3O15347 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HMGB3O15347 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGB3O15347 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB3O15347 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB3O15347 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC16.57■□□□□ 0.24
HMGB3O15347 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB3O15347 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB3O15347 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
HMGB3O15347 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC16.56■□□□□ 0.24
HMGB3O15347 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB3O15347 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
HMGB3O15347 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC16.56■□□□□ 0.24
HMGB3O15347 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC16.56■□□□□ 0.24
HMGB3O15347 EI24-211ENST00000534546 1544 ntTSL 2 BASIC16.56■□□□□ 0.24
HMGB3O15347 AC112907.3-201ENST00000577781 2400 ntBASIC16.56■□□□□ 0.24
HMGB3O15347 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
HMGB3O15347 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC16.56■□□□□ 0.24
HMGB3O15347 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB3O15347 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC16.56■□□□□ 0.24
HMGB3O15347 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC16.56■□□□□ 0.24
HMGB3O15347 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC16.56■□□□□ 0.24
HMGB3O15347 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB3O15347 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB3O15347 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB3O15347 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB3O15347 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB3O15347 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB3O15347 RARG-204ENST00000543726 1779 ntTSL 2 BASIC16.56■□□□□ 0.24
HMGB3O15347 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC16.56■□□□□ 0.24
HMGB3O15347 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB3O15347 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB3O15347 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB3O15347 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB3O15347 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC16.56■□□□□ 0.24
HMGB3O15347 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB3O15347 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB3O15347 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB3O15347 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC16.55■□□□□ 0.24
HMGB3O15347 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
HMGB3O15347 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.55■□□□□ 0.24
HMGB3O15347 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB3O15347 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC16.55■□□□□ 0.24
HMGB3O15347 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms