Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PCDHGA3Q9Y5H0 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHGA3Q9Y5H0 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHGA3Q9Y5H0 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
PCDHGA3Q9Y5H0 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.04■□□□□ 0.8
PCDHGA3Q9Y5H0 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHGA3Q9Y5H0 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.04■□□□□ 0.8
PCDHGA3Q9Y5H0 RBM17P2-201ENST00000616397 1405 ntBASIC20.04■□□□□ 0.8
PCDHGA3Q9Y5H0 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.04■□□□□ 0.8
PCDHGA3Q9Y5H0 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
PCDHGA3Q9Y5H0 RNA5SP413-201ENST00000516373 109 ntBASIC20.04■□□□□ 0.8
PCDHGA3Q9Y5H0 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHGA3Q9Y5H0 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
PCDHGA3Q9Y5H0 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHGA3Q9Y5H0 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.04■□□□□ 0.8
PCDHGA3Q9Y5H0 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
PCDHGA3Q9Y5H0 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
PCDHGA3Q9Y5H0 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.03■□□□□ 0.8
PCDHGA3Q9Y5H0 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHGA3Q9Y5H0 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.03■□□□□ 0.8
PCDHGA3Q9Y5H0 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHGA3Q9Y5H0 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.03■□□□□ 0.8
PCDHGA3Q9Y5H0 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.03■□□□□ 0.8
PCDHGA3Q9Y5H0 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.03■□□□□ 0.8
PCDHGA3Q9Y5H0 AL591742.1-201ENST00000604433 565 ntBASIC20.03■□□□□ 0.8
PCDHGA3Q9Y5H0 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.03■□□□□ 0.8
PCDHGA3Q9Y5H0 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHGA3Q9Y5H0 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.03■□□□□ 0.8
PCDHGA3Q9Y5H0 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PCDHGA3Q9Y5H0 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
PCDHGA3Q9Y5H0 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHGA3Q9Y5H0 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHGA3Q9Y5H0 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHGA3Q9Y5H0 AL391422.3-201ENST00000603791 2761 ntBASIC20.02■□□□□ 0.8
PCDHGA3Q9Y5H0 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.02■□□□□ 0.8
PCDHGA3Q9Y5H0 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHGA3Q9Y5H0 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCDHGA3Q9Y5H0 BX276092.2-201ENST00000417668 665 ntBASIC20.02■□□□□ 0.8
PCDHGA3Q9Y5H0 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.02■□□□□ 0.8
PCDHGA3Q9Y5H0 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.02■□□□□ 0.8
PCDHGA3Q9Y5H0 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.02■□□□□ 0.8
PCDHGA3Q9Y5H0 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.02■□□□□ 0.8
PCDHGA3Q9Y5H0 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
PCDHGA3Q9Y5H0 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
PCDHGA3Q9Y5H0 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
PCDHGA3Q9Y5H0 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.02■□□□□ 0.79
PCDHGA3Q9Y5H0 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.02■□□□□ 0.79
PCDHGA3Q9Y5H0 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHGA3Q9Y5H0 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHGA3Q9Y5H0 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHGA3Q9Y5H0 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.01■□□□□ 0.79
PCDHGA3Q9Y5H0 AC008687.6-201ENST00000596318 630 ntBASIC20.01■□□□□ 0.79
PCDHGA3Q9Y5H0 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.01■□□□□ 0.79
PCDHGA3Q9Y5H0 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHGA3Q9Y5H0 MYC-209ENST00000641252 345 ntBASIC20.01■□□□□ 0.79
PCDHGA3Q9Y5H0 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.01■□□□□ 0.79
PCDHGA3Q9Y5H0 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
PCDHGA3Q9Y5H0 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
PCDHGA3Q9Y5H0 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHGA3Q9Y5H0 AC026310.3-201ENST00000625186 2373 ntBASIC20.01■□□□□ 0.79
PCDHGA3Q9Y5H0 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
PCDHGA3Q9Y5H0 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PCDHGA3Q9Y5H0 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20■□□□□ 0.79
PCDHGA3Q9Y5H0 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20■□□□□ 0.79
PCDHGA3Q9Y5H0 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHGA3Q9Y5H0 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
PCDHGA3Q9Y5H0 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHGA3Q9Y5H0 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHGA3Q9Y5H0 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHGA3Q9Y5H0 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20■□□□□ 0.79
PCDHGA3Q9Y5H0 KRT18P29-201ENST00000397031 1267 ntBASIC20■□□□□ 0.79
PCDHGA3Q9Y5H0 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20■□□□□ 0.79
PCDHGA3Q9Y5H0 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20■□□□□ 0.79
PCDHGA3Q9Y5H0 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20■□□□□ 0.79
PCDHGA3Q9Y5H0 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20■□□□□ 0.79
PCDHGA3Q9Y5H0 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20■□□□□ 0.79
PCDHGA3Q9Y5H0 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20■□□□□ 0.79
PCDHGA3Q9Y5H0 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20■□□□□ 0.79
PCDHGA3Q9Y5H0 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHGA3Q9Y5H0 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20■□□□□ 0.79
PCDHGA3Q9Y5H0 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
PCDHGA3Q9Y5H0 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.99■□□□□ 0.79
PCDHGA3Q9Y5H0 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
PCDHGA3Q9Y5H0 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHGA3Q9Y5H0 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.99■□□□□ 0.79
PCDHGA3Q9Y5H0 AC097658.1-201ENST00000475555 843 ntBASIC19.99■□□□□ 0.79
PCDHGA3Q9Y5H0 RARRES2P4-201ENST00000514074 484 ntBASIC19.99■□□□□ 0.79
PCDHGA3Q9Y5H0 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.99■□□□□ 0.79
PCDHGA3Q9Y5H0 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
PCDHGA3Q9Y5H0 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.99■□□□□ 0.79
PCDHGA3Q9Y5H0 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.99■□□□□ 0.79
PCDHGA3Q9Y5H0 AC092667.1-201ENST00000434301 2586 ntBASIC19.99■□□□□ 0.79
PCDHGA3Q9Y5H0 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHGA3Q9Y5H0 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHGA3Q9Y5H0 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.99■□□□□ 0.79
PCDHGA3Q9Y5H0 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
PCDHGA3Q9Y5H0 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHGA3Q9Y5H0 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHGA3Q9Y5H0 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHGA3Q9Y5H0 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms