Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.2■□□□□ 0.82
PCDHB3Q9Y5E6 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDHB3Q9Y5E6 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
PCDHB3Q9Y5E6 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHB3Q9Y5E6 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.19■□□□□ 0.82
PCDHB3Q9Y5E6 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHB3Q9Y5E6 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHB3Q9Y5E6 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHB3Q9Y5E6 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHB3Q9Y5E6 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHB3Q9Y5E6 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDHB3Q9Y5E6 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDHB3Q9Y5E6 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.19■□□□□ 0.82
PCDHB3Q9Y5E6 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHB3Q9Y5E6 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.19■□□□□ 0.82
PCDHB3Q9Y5E6 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHB3Q9Y5E6 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.19■□□□□ 0.82
PCDHB3Q9Y5E6 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHB3Q9Y5E6 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHB3Q9Y5E6 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCDHB3Q9Y5E6 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 SLC7A5P1-201ENST00000568957 537 ntBASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCDHB3Q9Y5E6 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 AC083906.2-201ENST00000511578 360 ntBASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
PCDHB3Q9Y5E6 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 SLC29A4P1-201ENST00000398760 971 ntBASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 CD99P1-205ENST00000527459 561 ntBASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 AC005181.1-201ENST00000604782 1256 ntBASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHB3Q9Y5E6 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHB3Q9Y5E6 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHB3Q9Y5E6 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHB3Q9Y5E6 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHB3Q9Y5E6 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHB3Q9Y5E6 ABHD17AP1-201ENST00000358206 933 ntBASIC20.15■□□□□ 0.82
PCDHB3Q9Y5E6 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.15■□□□□ 0.82
PCDHB3Q9Y5E6 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHB3Q9Y5E6 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.15■□□□□ 0.82
PCDHB3Q9Y5E6 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.15■□□□□ 0.82
PCDHB3Q9Y5E6 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.15■□□□□ 0.82
PCDHB3Q9Y5E6 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms