Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
AP4S1Q9Y587 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
AP4S1Q9Y587 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
AP4S1Q9Y587 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.53■□□□□ 0.72
AP4S1Q9Y587 AC098818.2-201ENST00000564925 2320 ntBASIC19.53■□□□□ 0.72
AP4S1Q9Y587 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
AP4S1Q9Y587 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
AP4S1Q9Y587 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
AP4S1Q9Y587 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
AP4S1Q9Y587 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.53■□□□□ 0.72
AP4S1Q9Y587 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.52■□□□□ 0.72
AP4S1Q9Y587 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP4S1Q9Y587 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.52■□□□□ 0.72
AP4S1Q9Y587 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
AP4S1Q9Y587 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP4S1Q9Y587 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP4S1Q9Y587 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC19.52■□□□□ 0.72
AP4S1Q9Y587 AL117332.1-201ENST00000622628 974 ntBASIC19.52■□□□□ 0.72
AP4S1Q9Y587 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.52■□□□□ 0.72
AP4S1Q9Y587 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
AP4S1Q9Y587 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP4S1Q9Y587 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP4S1Q9Y587 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP4S1Q9Y587 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
AP4S1Q9Y587 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.52■□□□□ 0.71
AP4S1Q9Y587 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
AP4S1Q9Y587 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
AP4S1Q9Y587 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
AP4S1Q9Y587 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.52■□□□□ 0.71
AP4S1Q9Y587 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
AP4S1Q9Y587 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP4S1Q9Y587 AP006587.3-201ENST00000525742 1516 ntBASIC19.51■□□□□ 0.71
AP4S1Q9Y587 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
AP4S1Q9Y587 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
AP4S1Q9Y587 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
AP4S1Q9Y587 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
AP4S1Q9Y587 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
AP4S1Q9Y587 AC006455.2-201ENST00000429931 906 ntBASIC19.5■□□□□ 0.71
AP4S1Q9Y587 OR2I1P-207ENST00000453522 948 ntBASIC19.5■□□□□ 0.71
AP4S1Q9Y587 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
AP4S1Q9Y587 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
AP4S1Q9Y587 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.5■□□□□ 0.71
AP4S1Q9Y587 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
AP4S1Q9Y587 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.5■□□□□ 0.71
AP4S1Q9Y587 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
AP4S1Q9Y587 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
AP4S1Q9Y587 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
AP4S1Q9Y587 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
AP4S1Q9Y587 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
AP4S1Q9Y587 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
AP4S1Q9Y587 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
AP4S1Q9Y587 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.49■□□□□ 0.71
AP4S1Q9Y587 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
AP4S1Q9Y587 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
AP4S1Q9Y587 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.49■□□□□ 0.71
AP4S1Q9Y587 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
AP4S1Q9Y587 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC19.49■□□□□ 0.71
AP4S1Q9Y587 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.49■□□□□ 0.71
AP4S1Q9Y587 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
AP4S1Q9Y587 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.49■□□□□ 0.71
AP4S1Q9Y587 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
AP4S1Q9Y587 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
AP4S1Q9Y587 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
AP4S1Q9Y587 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
AP4S1Q9Y587 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.48■□□□□ 0.71
AP4S1Q9Y587 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
AP4S1Q9Y587 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
AP4S1Q9Y587 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.48■□□□□ 0.71
AP4S1Q9Y587 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
AP4S1Q9Y587 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
AP4S1Q9Y587 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
AP4S1Q9Y587 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
AP4S1Q9Y587 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC19.48■□□□□ 0.71
AP4S1Q9Y587 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
AP4S1Q9Y587 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.48■□□□□ 0.71
AP4S1Q9Y587 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
AP4S1Q9Y587 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
AP4S1Q9Y587 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
AP4S1Q9Y587 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms