Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HIF3AQ9Y2N7 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HIF3AQ9Y2N7 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HIF3AQ9Y2N7 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.64■□□□□ 0.57
HIF3AQ9Y2N7 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HIF3AQ9Y2N7 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.64■□□□□ 0.57
HIF3AQ9Y2N7 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC18.64■□□□□ 0.57
HIF3AQ9Y2N7 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HIF3AQ9Y2N7 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HIF3AQ9Y2N7 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.64■□□□□ 0.57
HIF3AQ9Y2N7 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.64■□□□□ 0.57
HIF3AQ9Y2N7 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.64■□□□□ 0.57
HIF3AQ9Y2N7 TERF1P2-201ENST00000583350 1212 ntBASIC18.64■□□□□ 0.57
HIF3AQ9Y2N7 AC007225.1-201ENST00000566331 1836 ntBASIC18.64■□□□□ 0.57
HIF3AQ9Y2N7 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HIF3AQ9Y2N7 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
HIF3AQ9Y2N7 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HIF3AQ9Y2N7 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HIF3AQ9Y2N7 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HIF3AQ9Y2N7 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HIF3AQ9Y2N7 AC073130.3-201ENST00000624389 2278 ntBASIC18.63■□□□□ 0.57
HIF3AQ9Y2N7 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HIF3AQ9Y2N7 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HIF3AQ9Y2N7 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
HIF3AQ9Y2N7 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HIF3AQ9Y2N7 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
HIF3AQ9Y2N7 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
HIF3AQ9Y2N7 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HIF3AQ9Y2N7 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
HIF3AQ9Y2N7 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HIF3AQ9Y2N7 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HIF3AQ9Y2N7 YBX1P1-201ENST00000445822 960 ntBASIC18.63■□□□□ 0.57
HIF3AQ9Y2N7 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC18.63■□□□□ 0.57
HIF3AQ9Y2N7 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC18.63■□□□□ 0.57
HIF3AQ9Y2N7 AC120498.10-201ENST00000621827 505 ntBASIC18.63■□□□□ 0.57
HIF3AQ9Y2N7 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HIF3AQ9Y2N7 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HIF3AQ9Y2N7 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 NAA20-201ENST00000310450 920 ntTSL 2 BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 DUX4L2-201ENST00000561772 1275 ntBASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 DUX4L6-201ENST00000626483 1275 ntBASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 DUX4L1-201ENST00000627662 1275 ntBASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 DUX4L8-201ENST00000629013 1275 ntBASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 DUX4L3-201ENST00000630187 1275 ntBASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 DUX4L7-201ENST00000630678 1275 ntBASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 DUX4L5-201ENST00000630834 1275 ntBASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 RARRES2P11-201ENST00000635158 484 ntBASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 AC073314.1-201ENST00000568729 2216 ntBASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
HIF3AQ9Y2N7 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HIF3AQ9Y2N7 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HIF3AQ9Y2N7 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.61■□□□□ 0.57
HIF3AQ9Y2N7 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HIF3AQ9Y2N7 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
HIF3AQ9Y2N7 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HIF3AQ9Y2N7 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HIF3AQ9Y2N7 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HIF3AQ9Y2N7 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HIF3AQ9Y2N7 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HIF3AQ9Y2N7 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.61■□□□□ 0.57
HIF3AQ9Y2N7 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HIF3AQ9Y2N7 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HIF3AQ9Y2N7 AC104187.1-201ENST00000607510 612 ntBASIC18.61■□□□□ 0.57
HIF3AQ9Y2N7 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HIF3AQ9Y2N7 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HIF3AQ9Y2N7 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HIF3AQ9Y2N7 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HIF3AQ9Y2N7 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HIF3AQ9Y2N7 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.6■□□□□ 0.57
HIF3AQ9Y2N7 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HIF3AQ9Y2N7 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
HIF3AQ9Y2N7 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HIF3AQ9Y2N7 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC18.6■□□□□ 0.57
HIF3AQ9Y2N7 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.6■□□□□ 0.57
HIF3AQ9Y2N7 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC18.6■□□□□ 0.57
HIF3AQ9Y2N7 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC18.6■□□□□ 0.57
HIF3AQ9Y2N7 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC18.6■□□□□ 0.57
HIF3AQ9Y2N7 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HIF3AQ9Y2N7 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.6■□□□□ 0.57
HIF3AQ9Y2N7 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms