Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
DKK3Q9UBP4 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
DKK3Q9UBP4 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.79■□□□□ 0.92
DKK3Q9UBP4 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.79■□□□□ 0.92
DKK3Q9UBP4 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
DKK3Q9UBP4 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.78■□□□□ 0.92
DKK3Q9UBP4 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
DKK3Q9UBP4 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
DKK3Q9UBP4 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.78■□□□□ 0.92
DKK3Q9UBP4 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.78■□□□□ 0.92
DKK3Q9UBP4 MIPEPP3-201ENST00000412105 444 ntBASIC20.78■□□□□ 0.92
DKK3Q9UBP4 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.78■□□□□ 0.92
DKK3Q9UBP4 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.78■□□□□ 0.92
DKK3Q9UBP4 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
DKK3Q9UBP4 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
DKK3Q9UBP4 AL138781.1-201ENST00000566567 1274 ntBASIC20.78■□□□□ 0.92
DKK3Q9UBP4 RNF165-205ENST00000588679 2904 ntBASIC20.78■□□□□ 0.92
DKK3Q9UBP4 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
DKK3Q9UBP4 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.78■□□□□ 0.92
DKK3Q9UBP4 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
DKK3Q9UBP4 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.78■□□□□ 0.92
DKK3Q9UBP4 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
DKK3Q9UBP4 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.78■□□□□ 0.92
DKK3Q9UBP4 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
DKK3Q9UBP4 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
DKK3Q9UBP4 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
DKK3Q9UBP4 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.77■□□□□ 0.92
DKK3Q9UBP4 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.77■□□□□ 0.92
DKK3Q9UBP4 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DKK3Q9UBP4 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DKK3Q9UBP4 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DKK3Q9UBP4 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.77■□□□□ 0.92
DKK3Q9UBP4 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.77■□□□□ 0.92
DKK3Q9UBP4 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.77■□□□□ 0.92
DKK3Q9UBP4 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.77■□□□□ 0.92
DKK3Q9UBP4 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.77■□□□□ 0.92
DKK3Q9UBP4 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.77■□□□□ 0.92
DKK3Q9UBP4 MIR4758-201ENST00000577688 71 ntBASIC20.77■□□□□ 0.92
DKK3Q9UBP4 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
DKK3Q9UBP4 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.77■□□□□ 0.91
DKK3Q9UBP4 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
DKK3Q9UBP4 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
DKK3Q9UBP4 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
DKK3Q9UBP4 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
DKK3Q9UBP4 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
DKK3Q9UBP4 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.76■□□□□ 0.91
DKK3Q9UBP4 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
DKK3Q9UBP4 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.76■□□□□ 0.91
DKK3Q9UBP4 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.76■□□□□ 0.91
DKK3Q9UBP4 AC092118.2-201ENST00000613495 667 ntBASIC20.76■□□□□ 0.91
DKK3Q9UBP4 AC133041.1-202ENST00000642053 222 ntBASIC20.76■□□□□ 0.91
DKK3Q9UBP4 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
DKK3Q9UBP4 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.76■□□□□ 0.91
DKK3Q9UBP4 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
DKK3Q9UBP4 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
DKK3Q9UBP4 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
DKK3Q9UBP4 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
DKK3Q9UBP4 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
DKK3Q9UBP4 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.75■□□□□ 0.91
DKK3Q9UBP4 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
DKK3Q9UBP4 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
DKK3Q9UBP4 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
DKK3Q9UBP4 AC069152.1-201ENST00000438030 544 ntBASIC20.75■□□□□ 0.91
DKK3Q9UBP4 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.75■□□□□ 0.91
DKK3Q9UBP4 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.75■□□□□ 0.91
DKK3Q9UBP4 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.75■□□□□ 0.91
DKK3Q9UBP4 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
DKK3Q9UBP4 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
DKK3Q9UBP4 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.75■□□□□ 0.91
DKK3Q9UBP4 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.75■□□□□ 0.91
DKK3Q9UBP4 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
DKK3Q9UBP4 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DKK3Q9UBP4 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
DKK3Q9UBP4 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.75■□□□□ 0.91
DKK3Q9UBP4 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
DKK3Q9UBP4 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DKK3Q9UBP4 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
DKK3Q9UBP4 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DKK3Q9UBP4 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
DKK3Q9UBP4 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.74■□□□□ 0.91
DKK3Q9UBP4 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
DKK3Q9UBP4 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
DKK3Q9UBP4 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
DKK3Q9UBP4 MCRIP2P1-201ENST00000394346 511 ntBASIC20.74■□□□□ 0.91
DKK3Q9UBP4 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.74■□□□□ 0.91
DKK3Q9UBP4 BX276092.2-201ENST00000417668 665 ntBASIC20.74■□□□□ 0.91
DKK3Q9UBP4 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
DKK3Q9UBP4 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.74■□□□□ 0.91
DKK3Q9UBP4 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.74■□□□□ 0.91
DKK3Q9UBP4 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
DKK3Q9UBP4 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.74■□□□□ 0.91
DKK3Q9UBP4 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
DKK3Q9UBP4 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.74■□□□□ 0.91
DKK3Q9UBP4 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
DKK3Q9UBP4 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
DKK3Q9UBP4 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
DKK3Q9UBP4 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
DKK3Q9UBP4 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DKK3Q9UBP4 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DKK3Q9UBP4 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms