Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
DDX56Q9NY93 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.52■■□□□ 1.04
DDX56Q9NY93 AP001160.3-201ENST00000601484 763 ntBASIC21.52■■□□□ 1.04
DDX56Q9NY93 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.52■■□□□ 1.04
DDX56Q9NY93 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
DDX56Q9NY93 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
DDX56Q9NY93 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC21.52■■□□□ 1.04
DDX56Q9NY93 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
DDX56Q9NY93 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
DDX56Q9NY93 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.52■■□□□ 1.03
DDX56Q9NY93 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
DDX56Q9NY93 BID-203ENST00000399765 1879 ntTSL 2 BASIC21.52■■□□□ 1.03
DDX56Q9NY93 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
DDX56Q9NY93 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21.52■■□□□ 1.03
DDX56Q9NY93 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
DDX56Q9NY93 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.51■■□□□ 1.03
DDX56Q9NY93 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
DDX56Q9NY93 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
DDX56Q9NY93 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.51■■□□□ 1.03
DDX56Q9NY93 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.51■■□□□ 1.03
DDX56Q9NY93 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
DDX56Q9NY93 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
DDX56Q9NY93 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.51■■□□□ 1.03
DDX56Q9NY93 FP700111.2-201ENST00000619190 1892 ntBASIC21.51■■□□□ 1.03
DDX56Q9NY93 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
DDX56Q9NY93 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
DDX56Q9NY93 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.51■■□□□ 1.03
DDX56Q9NY93 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
DDX56Q9NY93 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.5■■□□□ 1.03
DDX56Q9NY93 STAC-204ENST00000457375 1366 ntTSL 2 BASIC21.5■■□□□ 1.03
DDX56Q9NY93 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
DDX56Q9NY93 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
DDX56Q9NY93 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.5■■□□□ 1.03
DDX56Q9NY93 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
DDX56Q9NY93 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX56Q9NY93 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
DDX56Q9NY93 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.5■■□□□ 1.03
DDX56Q9NY93 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.5■■□□□ 1.03
DDX56Q9NY93 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.5■■□□□ 1.03
DDX56Q9NY93 KRT18P20-201ENST00000548986 1279 ntBASIC21.5■■□□□ 1.03
DDX56Q9NY93 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.5■■□□□ 1.03
DDX56Q9NY93 CCDC92B-201ENST00000575506 885 ntBASIC21.5■■□□□ 1.03
DDX56Q9NY93 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
DDX56Q9NY93 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.5■■□□□ 1.03
DDX56Q9NY93 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX56Q9NY93 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX56Q9NY93 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX56Q9NY93 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
DDX56Q9NY93 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.5■■□□□ 1.03
DDX56Q9NY93 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX56Q9NY93 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX56Q9NY93 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
DDX56Q9NY93 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
DDX56Q9NY93 AC027702.1-201ENST00000563810 1770 ntBASIC21.49■■□□□ 1.03
DDX56Q9NY93 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.49■■□□□ 1.03
DDX56Q9NY93 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
DDX56Q9NY93 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.49■■□□□ 1.03
DDX56Q9NY93 KRT18P14-201ENST00000534205 1250 ntBASIC21.49■■□□□ 1.03
DDX56Q9NY93 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.49■■□□□ 1.03
DDX56Q9NY93 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.49■■□□□ 1.03
DDX56Q9NY93 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.49■■□□□ 1.03
DDX56Q9NY93 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX56Q9NY93 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX56Q9NY93 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX56Q9NY93 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.49■■□□□ 1.03
DDX56Q9NY93 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX56Q9NY93 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.49■■□□□ 1.03
DDX56Q9NY93 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX56Q9NY93 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX56Q9NY93 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
DDX56Q9NY93 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
DDX56Q9NY93 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
DDX56Q9NY93 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
DDX56Q9NY93 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
DDX56Q9NY93 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.48■■□□□ 1.03
DDX56Q9NY93 SLC7A5P2-201ENST00000553010 536 ntBASIC21.48■■□□□ 1.03
DDX56Q9NY93 AC020907.5-201ENST00000624372 1936 ntBASIC21.48■■□□□ 1.03
DDX56Q9NY93 AC092667.1-201ENST00000434301 2586 ntBASIC21.48■■□□□ 1.03
DDX56Q9NY93 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
DDX56Q9NY93 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
DDX56Q9NY93 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
DDX56Q9NY93 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
DDX56Q9NY93 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX56Q9NY93 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX56Q9NY93 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.47■■□□□ 1.03
DDX56Q9NY93 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
DDX56Q9NY93 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.47■■□□□ 1.03
DDX56Q9NY93 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.47■■□□□ 1.03
DDX56Q9NY93 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
DDX56Q9NY93 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX56Q9NY93 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.47■■□□□ 1.03
DDX56Q9NY93 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.47■■□□□ 1.03
DDX56Q9NY93 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
DDX56Q9NY93 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
DDX56Q9NY93 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX56Q9NY93 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX56Q9NY93 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
DDX56Q9NY93 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.47■■□□□ 1.03
DDX56Q9NY93 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
DDX56Q9NY93 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms