Protein–RNA interactions for Protein: Q9NUD5

ZCCHC3, Zinc finger CCHC domain-containing protein 3, humanhuman

Known RBP Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZCCHC3Q9NUD5 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZCCHC3Q9NUD5 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.41■□□□□ 0.7
ZCCHC3Q9NUD5 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ZCCHC3Q9NUD5 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.41■□□□□ 0.7
ZCCHC3Q9NUD5 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
ZCCHC3Q9NUD5 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.4■□□□□ 0.7
ZCCHC3Q9NUD5 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.4■□□□□ 0.7
ZCCHC3Q9NUD5 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZCCHC3Q9NUD5 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.4■□□□□ 0.7
ZCCHC3Q9NUD5 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
ZCCHC3Q9NUD5 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ZCCHC3Q9NUD5 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZCCHC3Q9NUD5 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.4■□□□□ 0.7
ZCCHC3Q9NUD5 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.4■□□□□ 0.7
ZCCHC3Q9NUD5 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
ZCCHC3Q9NUD5 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.4■□□□□ 0.7
ZCCHC3Q9NUD5 AC004854.2-201ENST00000608450 1441 ntBASIC19.4■□□□□ 0.7
ZCCHC3Q9NUD5 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZCCHC3Q9NUD5 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ZCCHC3Q9NUD5 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
ZCCHC3Q9NUD5 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
ZCCHC3Q9NUD5 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
ZCCHC3Q9NUD5 FEM1AP1-201ENST00000431297 1995 ntBASIC19.39■□□□□ 0.7
ZCCHC3Q9NUD5 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZCCHC3Q9NUD5 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZCCHC3Q9NUD5 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZCCHC3Q9NUD5 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZCCHC3Q9NUD5 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZCCHC3Q9NUD5 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZCCHC3Q9NUD5 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.39■□□□□ 0.69
ZCCHC3Q9NUD5 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZCCHC3Q9NUD5 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.39■□□□□ 0.69
ZCCHC3Q9NUD5 SLC7A5P2-201ENST00000553010 536 ntBASIC19.39■□□□□ 0.69
ZCCHC3Q9NUD5 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZCCHC3Q9NUD5 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.39■□□□□ 0.69
ZCCHC3Q9NUD5 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZCCHC3Q9NUD5 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZCCHC3Q9NUD5 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZCCHC3Q9NUD5 AC011484.1-201ENST00000377652 1995 ntBASIC19.39■□□□□ 0.69
ZCCHC3Q9NUD5 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZCCHC3Q9NUD5 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZCCHC3Q9NUD5 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZCCHC3Q9NUD5 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZCCHC3Q9NUD5 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZCCHC3Q9NUD5 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZCCHC3Q9NUD5 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
ZCCHC3Q9NUD5 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
ZCCHC3Q9NUD5 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZCCHC3Q9NUD5 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
ZCCHC3Q9NUD5 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.38■□□□□ 0.69
ZCCHC3Q9NUD5 RARRES2P11-201ENST00000635158 484 ntBASIC19.38■□□□□ 0.69
ZCCHC3Q9NUD5 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
ZCCHC3Q9NUD5 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ZCCHC3Q9NUD5 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZCCHC3Q9NUD5 LINC01006-201ENST00000333319 2292 ntBASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZCCHC3Q9NUD5 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZCCHC3Q9NUD5 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZCCHC3Q9NUD5 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZCCHC3Q9NUD5 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZCCHC3Q9NUD5 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZCCHC3Q9NUD5 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZCCHC3Q9NUD5 LINC01521-201ENST00000504184 1943 ntBASIC19.36■□□□□ 0.69
ZCCHC3Q9NUD5 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
ZCCHC3Q9NUD5 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZCCHC3Q9NUD5 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
ZCCHC3Q9NUD5 KRT18P20-201ENST00000548986 1279 ntBASIC19.36■□□□□ 0.69
ZCCHC3Q9NUD5 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZCCHC3Q9NUD5 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.36■□□□□ 0.69
ZCCHC3Q9NUD5 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZCCHC3Q9NUD5 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
ZCCHC3Q9NUD5 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
ZCCHC3Q9NUD5 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZCCHC3Q9NUD5 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.35■□□□□ 0.69
ZCCHC3Q9NUD5 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZCCHC3Q9NUD5 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ZCCHC3Q9NUD5 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms