Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
POLR2J3Q9H1A7 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
POLR2J3Q9H1A7 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
POLR2J3Q9H1A7 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
POLR2J3Q9H1A7 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.08■□□□□ 0.64
POLR2J3Q9H1A7 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.08■□□□□ 0.64
POLR2J3Q9H1A7 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.08■□□□□ 0.64
POLR2J3Q9H1A7 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
POLR2J3Q9H1A7 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
POLR2J3Q9H1A7 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
POLR2J3Q9H1A7 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
POLR2J3Q9H1A7 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
POLR2J3Q9H1A7 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.08■□□□□ 0.64
POLR2J3Q9H1A7 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
POLR2J3Q9H1A7 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 AL031432.3-201ENST00000607698 485 ntBASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 AP004607.4-201ENST00000530158 1459 ntBASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
POLR2J3Q9H1A7 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
POLR2J3Q9H1A7 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
POLR2J3Q9H1A7 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.06■□□□□ 0.64
POLR2J3Q9H1A7 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
POLR2J3Q9H1A7 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.06■□□□□ 0.64
POLR2J3Q9H1A7 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
POLR2J3Q9H1A7 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.06■□□□□ 0.64
POLR2J3Q9H1A7 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
POLR2J3Q9H1A7 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.06■□□□□ 0.64
POLR2J3Q9H1A7 TPRG1LP1-201ENST00000598702 760 ntBASIC19.06■□□□□ 0.64
POLR2J3Q9H1A7 AL358852.1-201ENST00000623174 1268 ntBASIC19.06■□□□□ 0.64
POLR2J3Q9H1A7 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
POLR2J3Q9H1A7 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
POLR2J3Q9H1A7 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
POLR2J3Q9H1A7 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
POLR2J3Q9H1A7 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
POLR2J3Q9H1A7 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
POLR2J3Q9H1A7 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.05■□□□□ 0.64
POLR2J3Q9H1A7 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
POLR2J3Q9H1A7 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
POLR2J3Q9H1A7 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.05■□□□□ 0.64
POLR2J3Q9H1A7 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
POLR2J3Q9H1A7 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
POLR2J3Q9H1A7 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.05■□□□□ 0.64
POLR2J3Q9H1A7 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
POLR2J3Q9H1A7 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
POLR2J3Q9H1A7 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.05■□□□□ 0.64
POLR2J3Q9H1A7 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.05■□□□□ 0.64
POLR2J3Q9H1A7 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
POLR2J3Q9H1A7 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
POLR2J3Q9H1A7 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.05■□□□□ 0.64
POLR2J3Q9H1A7 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
POLR2J3Q9H1A7 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
POLR2J3Q9H1A7 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.05■□□□□ 0.64
POLR2J3Q9H1A7 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
POLR2J3Q9H1A7 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 POU5F1P4-201ENST00000413175 1085 ntBASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.04■□□□□ 0.64
POLR2J3Q9H1A7 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.03■□□□□ 0.64
POLR2J3Q9H1A7 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
POLR2J3Q9H1A7 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
POLR2J3Q9H1A7 SUDS3P1-201ENST00000505831 966 ntBASIC19.03■□□□□ 0.64
POLR2J3Q9H1A7 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms