Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
RPAP1Q9BWH6 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC25.18■■□□□ 1.62
RPAP1Q9BWH6 FGF8-207ENST00000618991 856 ntTSL 3 BASIC25.18■■□□□ 1.62
RPAP1Q9BWH6 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC25.18■■□□□ 1.62
RPAP1Q9BWH6 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
RPAP1Q9BWH6 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
RPAP1Q9BWH6 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC25.18■■□□□ 1.62
RPAP1Q9BWH6 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
RPAP1Q9BWH6 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC25.18■■□□□ 1.62
RPAP1Q9BWH6 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC25.18■■□□□ 1.62
RPAP1Q9BWH6 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC25.18■■□□□ 1.62
RPAP1Q9BWH6 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
RPAP1Q9BWH6 AF106564.1-201ENST00000607058 2553 ntBASIC25.17■■□□□ 1.62
RPAP1Q9BWH6 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
RPAP1Q9BWH6 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
RPAP1Q9BWH6 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
RPAP1Q9BWH6 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
RPAP1Q9BWH6 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
RPAP1Q9BWH6 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
RPAP1Q9BWH6 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
RPAP1Q9BWH6 ITM2C-210ENST00000620962 501 ntBASIC25.17■■□□□ 1.62
RPAP1Q9BWH6 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC25.17■■□□□ 1.62
RPAP1Q9BWH6 MYC-209ENST00000641252 345 ntBASIC25.17■■□□□ 1.62
RPAP1Q9BWH6 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC25.17■■□□□ 1.62
RPAP1Q9BWH6 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
RPAP1Q9BWH6 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC25.16■■□□□ 1.62
RPAP1Q9BWH6 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
RPAP1Q9BWH6 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
RPAP1Q9BWH6 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
RPAP1Q9BWH6 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
RPAP1Q9BWH6 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC25.16■■□□□ 1.62
RPAP1Q9BWH6 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
RPAP1Q9BWH6 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC25.16■■□□□ 1.62
RPAP1Q9BWH6 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC25.16■■□□□ 1.62
RPAP1Q9BWH6 AC243732.1-201ENST00000612648 864 ntBASIC25.16■■□□□ 1.62
RPAP1Q9BWH6 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC25.16■■□□□ 1.62
RPAP1Q9BWH6 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC25.16■■□□□ 1.62
RPAP1Q9BWH6 AC008694.1-202ENST00000636953 945 ntBASIC25.16■■□□□ 1.62
RPAP1Q9BWH6 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC25.15■■□□□ 1.62
RPAP1Q9BWH6 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
RPAP1Q9BWH6 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
RPAP1Q9BWH6 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
RPAP1Q9BWH6 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
RPAP1Q9BWH6 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
RPAP1Q9BWH6 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC25.15■■□□□ 1.62
RPAP1Q9BWH6 AC083880.1-201ENST00000608266 535 ntBASIC25.15■■□□□ 1.62
RPAP1Q9BWH6 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
RPAP1Q9BWH6 RBM17P2-201ENST00000616397 1405 ntBASIC25.15■■□□□ 1.62
RPAP1Q9BWH6 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
RPAP1Q9BWH6 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
RPAP1Q9BWH6 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
RPAP1Q9BWH6 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC25.14■■□□□ 1.62
RPAP1Q9BWH6 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC25.14■■□□□ 1.62
RPAP1Q9BWH6 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC25.14■■□□□ 1.62
RPAP1Q9BWH6 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC25.14■■□□□ 1.62
RPAP1Q9BWH6 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC25.14■■□□□ 1.61
RPAP1Q9BWH6 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC25.14■■□□□ 1.61
RPAP1Q9BWH6 RNA5SP413-201ENST00000516373 109 ntBASIC25.14■■□□□ 1.61
RPAP1Q9BWH6 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC25.14■■□□□ 1.61
RPAP1Q9BWH6 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC25.14■■□□□ 1.61
RPAP1Q9BWH6 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
RPAP1Q9BWH6 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
RPAP1Q9BWH6 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC25.14■■□□□ 1.61
RPAP1Q9BWH6 NARF-205ENST00000412079 1760 ntTSL 5 BASIC25.14■■□□□ 1.61
RPAP1Q9BWH6 DYM-203ENST00000442713 2147 ntTSL 2 BASIC25.14■■□□□ 1.61
RPAP1Q9BWH6 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
RPAP1Q9BWH6 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
RPAP1Q9BWH6 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC25.13■■□□□ 1.61
RPAP1Q9BWH6 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
RPAP1Q9BWH6 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
RPAP1Q9BWH6 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
RPAP1Q9BWH6 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC25.13■■□□□ 1.61
RPAP1Q9BWH6 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC25.13■■□□□ 1.61
RPAP1Q9BWH6 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC25.13■■□□□ 1.61
RPAP1Q9BWH6 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC25.13■■□□□ 1.61
RPAP1Q9BWH6 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
RPAP1Q9BWH6 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
RPAP1Q9BWH6 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
RPAP1Q9BWH6 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC25.13■■□□□ 1.61
RPAP1Q9BWH6 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
RPAP1Q9BWH6 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
RPAP1Q9BWH6 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC25.12■■□□□ 1.61
RPAP1Q9BWH6 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC25.12■■□□□ 1.61
RPAP1Q9BWH6 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
RPAP1Q9BWH6 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC25.12■■□□□ 1.61
RPAP1Q9BWH6 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
RPAP1Q9BWH6 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
RPAP1Q9BWH6 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
RPAP1Q9BWH6 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC25.12■■□□□ 1.61
RPAP1Q9BWH6 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC25.12■■□□□ 1.61
RPAP1Q9BWH6 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
RPAP1Q9BWH6 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
RPAP1Q9BWH6 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
RPAP1Q9BWH6 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC25.12■■□□□ 1.61
RPAP1Q9BWH6 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC25.12■■□□□ 1.61
RPAP1Q9BWH6 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
RPAP1Q9BWH6 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC25.12■■□□□ 1.61
RPAP1Q9BWH6 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
RPAP1Q9BWH6 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC25.11■■□□□ 1.61
RPAP1Q9BWH6 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC25.11■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms