Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 AC142381.3-201ENST00000568208 1670 ntBASIC20.66■□□□□ 0.9
VPS13AQ96RL7 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
VPS13AQ96RL7 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS13AQ96RL7 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.66■□□□□ 0.9
VPS13AQ96RL7 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
VPS13AQ96RL7 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.66■□□□□ 0.9
VPS13AQ96RL7 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS13AQ96RL7 C11orf96-202ENST00000528572 1834 ntBASIC20.66■□□□□ 0.9
VPS13AQ96RL7 CRYGFP-201ENST00000418459 633 ntBASIC20.66■□□□□ 0.9
VPS13AQ96RL7 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.66■□□□□ 0.9
VPS13AQ96RL7 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS13AQ96RL7 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.66■□□□□ 0.9
VPS13AQ96RL7 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS13AQ96RL7 ANOS2P-203ENST00000472227 1816 ntBASIC20.65■□□□□ 0.9
VPS13AQ96RL7 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
VPS13AQ96RL7 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS13AQ96RL7 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.65■□□□□ 0.9
VPS13AQ96RL7 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS13AQ96RL7 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS13AQ96RL7 AC243732.1-201ENST00000612648 864 ntBASIC20.65■□□□□ 0.9
VPS13AQ96RL7 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.65■□□□□ 0.9
VPS13AQ96RL7 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS13AQ96RL7 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS13AQ96RL7 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS13AQ96RL7 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.65■□□□□ 0.9
VPS13AQ96RL7 REXO1L10P-201ENST00000615707 1290 ntBASIC20.65■□□□□ 0.9
VPS13AQ96RL7 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS13AQ96RL7 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
VPS13AQ96RL7 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.65■□□□□ 0.9
VPS13AQ96RL7 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
VPS13AQ96RL7 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS13AQ96RL7 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS13AQ96RL7 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS13AQ96RL7 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VPS13AQ96RL7 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS13AQ96RL7 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS13AQ96RL7 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS13AQ96RL7 NUDT16P1-203ENST00000513809 620 ntBASIC20.64■□□□□ 0.89
VPS13AQ96RL7 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VPS13AQ96RL7 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS13AQ96RL7 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS13AQ96RL7 AC093323.1-202ENST00000635031 2045 ntBASIC20.63■□□□□ 0.89
VPS13AQ96RL7 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS13AQ96RL7 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
VPS13AQ96RL7 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS13AQ96RL7 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.63■□□□□ 0.89
VPS13AQ96RL7 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS13AQ96RL7 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
VPS13AQ96RL7 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
VPS13AQ96RL7 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS13AQ96RL7 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.63■□□□□ 0.89
VPS13AQ96RL7 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VPS13AQ96RL7 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS13AQ96RL7 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
VPS13AQ96RL7 TPM4P1-201ENST00000436100 807 ntBASIC20.63■□□□□ 0.89
VPS13AQ96RL7 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.63■□□□□ 0.89
VPS13AQ96RL7 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
VPS13AQ96RL7 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.63■□□□□ 0.89
VPS13AQ96RL7 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VPS13AQ96RL7 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 KRT18P22-201ENST00000402024 1347 ntBASIC20.62■□□□□ 0.89
VPS13AQ96RL7 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 AC092053.2-201ENST00000640557 1818 ntBASIC20.62■□□□□ 0.89
VPS13AQ96RL7 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 CYP2D8P-201ENST00000433633 1490 ntBASIC20.62■□□□□ 0.89
VPS13AQ96RL7 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
VPS13AQ96RL7 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.61■□□□□ 0.89
VPS13AQ96RL7 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS13AQ96RL7 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
VPS13AQ96RL7 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.61■□□□□ 0.89
VPS13AQ96RL7 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS13AQ96RL7 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.61■□□□□ 0.89
VPS13AQ96RL7 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.61■□□□□ 0.89
VPS13AQ96RL7 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS13AQ96RL7 AF186192.3-201ENST00000583427 947 ntBASIC20.61■□□□□ 0.89
VPS13AQ96RL7 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC20.61■□□□□ 0.89
VPS13AQ96RL7 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS13AQ96RL7 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS13AQ96RL7 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS13AQ96RL7 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.61■□□□□ 0.89
VPS13AQ96RL7 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC20.61■□□□□ 0.89
VPS13AQ96RL7 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms