Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS35Q96QK1 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.53■□□□□ 0.88
VPS35Q96QK1 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS35Q96QK1 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
VPS35Q96QK1 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
VPS35Q96QK1 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.53■□□□□ 0.88
VPS35Q96QK1 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS35Q96QK1 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.53■□□□□ 0.88
VPS35Q96QK1 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS35Q96QK1 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS35Q96QK1 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
VPS35Q96QK1 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS35Q96QK1 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
VPS35Q96QK1 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS35Q96QK1 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.53■□□□□ 0.88
VPS35Q96QK1 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VPS35Q96QK1 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
VPS35Q96QK1 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS35Q96QK1 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS35Q96QK1 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VPS35Q96QK1 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VPS35Q96QK1 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS35Q96QK1 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.52■□□□□ 0.88
VPS35Q96QK1 MIR663A-201ENST00000385250 93 ntBASIC20.52■□□□□ 0.88
VPS35Q96QK1 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.52■□□□□ 0.88
VPS35Q96QK1 CYP2T1P-201ENST00000432607 1285 ntBASIC20.52■□□□□ 0.88
VPS35Q96QK1 CDV3P1-201ENST00000471403 739 ntBASIC20.52■□□□□ 0.88
VPS35Q96QK1 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VPS35Q96QK1 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS35Q96QK1 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS35Q96QK1 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
VPS35Q96QK1 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
VPS35Q96QK1 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
VPS35Q96QK1 AC116050.2-201ENST00000612102 1779 ntBASIC20.51■□□□□ 0.87
VPS35Q96QK1 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS35Q96QK1 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS35Q96QK1 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS35Q96QK1 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS35Q96QK1 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS35Q96QK1 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS35Q96QK1 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS35Q96QK1 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS35Q96QK1 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS35Q96QK1 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
VPS35Q96QK1 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS35Q96QK1 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS35Q96QK1 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
VPS35Q96QK1 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.51■□□□□ 0.87
VPS35Q96QK1 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS35Q96QK1 FAM21FP-204ENST00000608637 956 ntBASIC20.51■□□□□ 0.87
VPS35Q96QK1 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS35Q96QK1 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS35Q96QK1 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS35Q96QK1 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS35Q96QK1 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS35Q96QK1 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS35Q96QK1 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
VPS35Q96QK1 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS35Q96QK1 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS35Q96QK1 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS35Q96QK1 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS35Q96QK1 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS35Q96QK1 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS35Q96QK1 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
VPS35Q96QK1 AC007322.3-201ENST00000426526 701 ntBASIC20.5■□□□□ 0.87
VPS35Q96QK1 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS35Q96QK1 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VPS35Q96QK1 AL050303.2-201ENST00000619798 666 ntBASIC20.5■□□□□ 0.87
VPS35Q96QK1 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS35Q96QK1 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.5■□□□□ 0.87
VPS35Q96QK1 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.5■□□□□ 0.87
VPS35Q96QK1 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS35Q96QK1 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS35Q96QK1 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS35Q96QK1 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS35Q96QK1 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS35Q96QK1 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS35Q96QK1 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS35Q96QK1 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.49■□□□□ 0.87
VPS35Q96QK1 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS35Q96QK1 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS35Q96QK1 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.49■□□□□ 0.87
VPS35Q96QK1 AC006970.2-201ENST00000450065 779 ntBASIC20.49■□□□□ 0.87
VPS35Q96QK1 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.49■□□□□ 0.87
VPS35Q96QK1 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.49■□□□□ 0.87
VPS35Q96QK1 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS35Q96QK1 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
VPS35Q96QK1 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.49■□□□□ 0.87
VPS35Q96QK1 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.49■□□□□ 0.87
VPS35Q96QK1 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
VPS35Q96QK1 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS35Q96QK1 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS35Q96QK1 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
VPS35Q96QK1 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.48■□□□□ 0.87
VPS35Q96QK1 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS35Q96QK1 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS35Q96QK1 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
VPS35Q96QK1 AC133552.2-202ENST00000575694 574 ntBASIC20.48■□□□□ 0.87
VPS35Q96QK1 AC069236.1-201ENST00000604339 616 ntBASIC20.48■□□□□ 0.87
VPS35Q96QK1 AC016405.3-201ENST00000607710 860 ntBASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms