Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
TTC28Q96AY4 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
TTC28Q96AY4 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
TTC28Q96AY4 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TTC28Q96AY4 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TTC28Q96AY4 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
TTC28Q96AY4 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TTC28Q96AY4 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TTC28Q96AY4 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TTC28Q96AY4 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
TTC28Q96AY4 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.34■■□□□ 1.01
TTC28Q96AY4 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
TTC28Q96AY4 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TTC28Q96AY4 MIR1238-201ENST00000408483 83 ntBASIC21.34■■□□□ 1.01
TTC28Q96AY4 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
TTC28Q96AY4 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC21.34■■□□□ 1.01
TTC28Q96AY4 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC21.34■■□□□ 1.01
TTC28Q96AY4 LINC01238-205ENST00000567549 1107 ntBASIC21.34■■□□□ 1.01
TTC28Q96AY4 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TTC28Q96AY4 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
TTC28Q96AY4 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TTC28Q96AY4 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
TTC28Q96AY4 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TTC28Q96AY4 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.33■■□□□ 1.01
TTC28Q96AY4 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1.01
TTC28Q96AY4 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TTC28Q96AY4 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TTC28Q96AY4 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
TTC28Q96AY4 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC21.33■■□□□ 1
TTC28Q96AY4 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TTC28Q96AY4 UNC93B2-201ENST00000285383 730 ntBASIC21.33■■□□□ 1
TTC28Q96AY4 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TTC28Q96AY4 AC246785.2-201ENST00000432512 513 ntBASIC21.33■■□□□ 1
TTC28Q96AY4 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TTC28Q96AY4 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC21.33■■□□□ 1
TTC28Q96AY4 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC21.33■■□□□ 1
TTC28Q96AY4 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1
TTC28Q96AY4 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TTC28Q96AY4 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TTC28Q96AY4 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC21.32■■□□□ 1
TTC28Q96AY4 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.32■■□□□ 1
TTC28Q96AY4 NDUFV2-AS1-203ENST00000608008 779 ntBASIC21.32■■□□□ 1
TTC28Q96AY4 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TTC28Q96AY4 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.32■■□□□ 1
TTC28Q96AY4 AC022211.4-201ENST00000625094 2161 ntBASIC21.32■■□□□ 1
TTC28Q96AY4 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TTC28Q96AY4 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
TTC28Q96AY4 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.32■■□□□ 1
TTC28Q96AY4 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.32■■□□□ 1
TTC28Q96AY4 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.32■■□□□ 1
TTC28Q96AY4 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
TTC28Q96AY4 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.32■■□□□ 1
TTC28Q96AY4 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.32■■□□□ 1
TTC28Q96AY4 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
TTC28Q96AY4 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
TTC28Q96AY4 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
TTC28Q96AY4 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
TTC28Q96AY4 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
TTC28Q96AY4 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC21.31■■□□□ 1
TTC28Q96AY4 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.31■■□□□ 1
TTC28Q96AY4 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
TTC28Q96AY4 AC142086.6-201ENST00000621154 1765 ntBASIC21.31■■□□□ 1
TTC28Q96AY4 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TTC28Q96AY4 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.31■■□□□ 1
TTC28Q96AY4 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC21.31■■□□□ 1
TTC28Q96AY4 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
TTC28Q96AY4 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
TTC28Q96AY4 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.3■■□□□ 1
TTC28Q96AY4 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.3■■□□□ 1
TTC28Q96AY4 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TTC28Q96AY4 ST7-202ENST00000323984 2142 ntTSL 5 BASIC21.3■■□□□ 1
TTC28Q96AY4 ST7-207ENST00000393449 2127 ntTSL 5 BASIC21.3■■□□□ 1
TTC28Q96AY4 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
TTC28Q96AY4 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TTC28Q96AY4 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.3■■□□□ 1
TTC28Q96AY4 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC21.3■■□□□ 1
TTC28Q96AY4 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.3■■□□□ 1
TTC28Q96AY4 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TTC28Q96AY4 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
TTC28Q96AY4 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.3■■□□□ 1
TTC28Q96AY4 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
TTC28Q96AY4 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TTC28Q96AY4 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC21.29■■□□□ 1
TTC28Q96AY4 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC21.29■■□□□ 1
TTC28Q96AY4 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC21.29■■□□□ 1
TTC28Q96AY4 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC21.29■■□□□ 1
TTC28Q96AY4 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC21.29■■□□□ 1
TTC28Q96AY4 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.29■■□□□ 1
TTC28Q96AY4 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC21.29■■□□□ 1
TTC28Q96AY4 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
TTC28Q96AY4 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
TTC28Q96AY4 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.29■■□□□ 1
TTC28Q96AY4 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TTC28Q96AY4 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.29■■□□□ 1
TTC28Q96AY4 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC21.29■■□□□ 1
TTC28Q96AY4 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
TTC28Q96AY4 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.29■■□□□ 1
TTC28Q96AY4 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TTC28Q96AY4 LINC01960-201ENST00000563759 1884 ntBASIC21.28■■□□□ 1
TTC28Q96AY4 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms