Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SLC44A3Q8N4M1 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
SLC44A3Q8N4M1 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
SLC44A3Q8N4M1 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.28■■□□□ 1
SLC44A3Q8N4M1 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
SLC44A3Q8N4M1 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC21.28■■□□□ 1
SLC44A3Q8N4M1 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC21.28■■□□□ 1
SLC44A3Q8N4M1 AC133681.1-201ENST00000465482 601 ntBASIC21.28■■□□□ 1
SLC44A3Q8N4M1 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.28■■□□□ 1
SLC44A3Q8N4M1 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.28■■□□□ 1
SLC44A3Q8N4M1 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC21.28■■□□□ 1
SLC44A3Q8N4M1 AL023875.1-201ENST00000640777 796 ntBASIC21.28■■□□□ 1
SLC44A3Q8N4M1 AL049637.2-201ENST00000641778 930 ntBASIC21.28■■□□□ 1
SLC44A3Q8N4M1 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SLC44A3Q8N4M1 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.28■■□□□ 1
SLC44A3Q8N4M1 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.28■■□□□ 1
SLC44A3Q8N4M1 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.28■■□□□ 1
SLC44A3Q8N4M1 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SLC44A3Q8N4M1 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
SLC44A3Q8N4M1 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SLC44A3Q8N4M1 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
SLC44A3Q8N4M1 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SLC44A3Q8N4M1 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SLC44A3Q8N4M1 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SLC44A3Q8N4M1 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
SLC44A3Q8N4M1 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.27■■□□□ 1
SLC44A3Q8N4M1 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
SLC44A3Q8N4M1 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC21.27■■□□□ 1
SLC44A3Q8N4M1 CBFB-203ENST00000561924 584 ntTSL 5 BASIC21.27■■□□□ 1
SLC44A3Q8N4M1 C2orf69P4-201ENST00000565394 541 ntBASIC21.27■■□□□ 1
SLC44A3Q8N4M1 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
SLC44A3Q8N4M1 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.27■■□□□ 1
SLC44A3Q8N4M1 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21.27■■□□□ 1
SLC44A3Q8N4M1 AP001412.1-201ENST00000608405 714 ntBASIC21.27■■□□□ 1
SLC44A3Q8N4M1 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SLC44A3Q8N4M1 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.27■■□□□ 1
SLC44A3Q8N4M1 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.27■■□□□ 1
SLC44A3Q8N4M1 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SLC44A3Q8N4M1 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.27■□□□□ 0.99
SLC44A3Q8N4M1 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SLC44A3Q8N4M1 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SLC44A3Q8N4M1 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SLC44A3Q8N4M1 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SLC44A3Q8N4M1 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SLC44A3Q8N4M1 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SLC44A3Q8N4M1 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SLC44A3Q8N4M1 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
SLC44A3Q8N4M1 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
SLC44A3Q8N4M1 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SLC44A3Q8N4M1 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
SLC44A3Q8N4M1 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SLC44A3Q8N4M1 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SLC44A3Q8N4M1 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SLC44A3Q8N4M1 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SLC44A3Q8N4M1 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.26■□□□□ 0.99
SLC44A3Q8N4M1 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
SLC44A3Q8N4M1 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.26■□□□□ 0.99
SLC44A3Q8N4M1 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
SLC44A3Q8N4M1 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC21.26■□□□□ 0.99
SLC44A3Q8N4M1 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC21.26■□□□□ 0.99
SLC44A3Q8N4M1 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC21.26■□□□□ 0.99
SLC44A3Q8N4M1 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SLC44A3Q8N4M1 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC21.26■□□□□ 0.99
SLC44A3Q8N4M1 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
SLC44A3Q8N4M1 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SLC44A3Q8N4M1 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SLC44A3Q8N4M1 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SLC44A3Q8N4M1 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SLC44A3Q8N4M1 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SLC44A3Q8N4M1 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SLC44A3Q8N4M1 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SLC44A3Q8N4M1 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.25■□□□□ 0.99
SLC44A3Q8N4M1 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SLC44A3Q8N4M1 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.25■□□□□ 0.99
SLC44A3Q8N4M1 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SLC44A3Q8N4M1 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SLC44A3Q8N4M1 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SLC44A3Q8N4M1 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.25■□□□□ 0.99
SLC44A3Q8N4M1 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC21.25■□□□□ 0.99
SLC44A3Q8N4M1 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC21.25■□□□□ 0.99
SLC44A3Q8N4M1 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.25■□□□□ 0.99
SLC44A3Q8N4M1 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
SLC44A3Q8N4M1 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
SLC44A3Q8N4M1 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.25■□□□□ 0.99
SLC44A3Q8N4M1 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.25■□□□□ 0.99
SLC44A3Q8N4M1 AC133561.5-201ENST00000635547 218 ntBASIC21.25■□□□□ 0.99
SLC44A3Q8N4M1 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SLC44A3Q8N4M1 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SLC44A3Q8N4M1 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 AC010542.4-201ENST00000563151 1910 ntBASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 TSPY15P-201ENST00000457163 923 ntBASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms