Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VRK3Q8IV63 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.25■□□□□ 0.83
VRK3Q8IV63 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VRK3Q8IV63 AC011484.1-201ENST00000377652 1995 ntBASIC20.25■□□□□ 0.83
VRK3Q8IV63 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VRK3Q8IV63 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.24■□□□□ 0.83
VRK3Q8IV63 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.24■□□□□ 0.83
VRK3Q8IV63 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.24■□□□□ 0.83
VRK3Q8IV63 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
VRK3Q8IV63 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VRK3Q8IV63 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
VRK3Q8IV63 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.24■□□□□ 0.83
VRK3Q8IV63 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
VRK3Q8IV63 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.24■□□□□ 0.83
VRK3Q8IV63 AC013268.1-206ENST00000638368 961 ntBASIC20.24■□□□□ 0.83
VRK3Q8IV63 AC112229.1-201ENST00000639295 961 ntBASIC20.24■□□□□ 0.83
VRK3Q8IV63 AC073111.5-205ENST00000641717 521 ntBASIC20.24■□□□□ 0.83
VRK3Q8IV63 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VRK3Q8IV63 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VRK3Q8IV63 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VRK3Q8IV63 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VRK3Q8IV63 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.24■□□□□ 0.83
VRK3Q8IV63 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
VRK3Q8IV63 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VRK3Q8IV63 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VRK3Q8IV63 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
VRK3Q8IV63 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VRK3Q8IV63 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
VRK3Q8IV63 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
VRK3Q8IV63 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VRK3Q8IV63 CDCA4P2-201ENST00000441182 718 ntBASIC20.23■□□□□ 0.83
VRK3Q8IV63 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.23■□□□□ 0.83
VRK3Q8IV63 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.23■□□□□ 0.83
VRK3Q8IV63 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.23■□□□□ 0.83
VRK3Q8IV63 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.23■□□□□ 0.83
VRK3Q8IV63 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.23■□□□□ 0.83
VRK3Q8IV63 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
VRK3Q8IV63 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VRK3Q8IV63 AC116050.2-201ENST00000612102 1779 ntBASIC20.23■□□□□ 0.83
VRK3Q8IV63 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
VRK3Q8IV63 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.22■□□□□ 0.83
VRK3Q8IV63 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VRK3Q8IV63 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.22■□□□□ 0.83
VRK3Q8IV63 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VRK3Q8IV63 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.22■□□□□ 0.83
VRK3Q8IV63 AC007322.4-201ENST00000509611 723 ntBASIC20.22■□□□□ 0.83
VRK3Q8IV63 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.22■□□□□ 0.83
VRK3Q8IV63 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
VRK3Q8IV63 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VRK3Q8IV63 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.22■□□□□ 0.83
VRK3Q8IV63 AC006128.1-201ENST00000624704 1661 ntBASIC20.22■□□□□ 0.83
VRK3Q8IV63 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VRK3Q8IV63 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VRK3Q8IV63 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.22■□□□□ 0.83
VRK3Q8IV63 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.21■□□□□ 0.83
VRK3Q8IV63 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.21■□□□□ 0.83
VRK3Q8IV63 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.21■□□□□ 0.83
VRK3Q8IV63 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VRK3Q8IV63 AC068338.2-201ENST00000563278 1430 ntBASIC20.21■□□□□ 0.83
VRK3Q8IV63 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.21■□□□□ 0.83
VRK3Q8IV63 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VRK3Q8IV63 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.21■□□□□ 0.83
VRK3Q8IV63 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
VRK3Q8IV63 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VRK3Q8IV63 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VRK3Q8IV63 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.21■□□□□ 0.83
VRK3Q8IV63 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
VRK3Q8IV63 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VRK3Q8IV63 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VRK3Q8IV63 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.21■□□□□ 0.83
VRK3Q8IV63 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.21■□□□□ 0.83
VRK3Q8IV63 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.21■□□□□ 0.83
VRK3Q8IV63 RAP2CP1-201ENST00000605103 478 ntBASIC20.21■□□□□ 0.83
VRK3Q8IV63 AC016405.3-201ENST00000607710 860 ntBASIC20.21■□□□□ 0.83
VRK3Q8IV63 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
VRK3Q8IV63 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
VRK3Q8IV63 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VRK3Q8IV63 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.21■□□□□ 0.83
VRK3Q8IV63 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VRK3Q8IV63 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.21■□□□□ 0.83
VRK3Q8IV63 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VRK3Q8IV63 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.21■□□□□ 0.83
VRK3Q8IV63 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VRK3Q8IV63 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
VRK3Q8IV63 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VRK3Q8IV63 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
VRK3Q8IV63 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
VRK3Q8IV63 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
VRK3Q8IV63 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VRK3Q8IV63 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VRK3Q8IV63 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VRK3Q8IV63 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
VRK3Q8IV63 AL591742.1-201ENST00000604433 565 ntBASIC20.2■□□□□ 0.82
VRK3Q8IV63 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
VRK3Q8IV63 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.2■□□□□ 0.82
VRK3Q8IV63 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VRK3Q8IV63 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
VRK3Q8IV63 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
VRK3Q8IV63 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
VRK3Q8IV63 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms