Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CSMD3Q7Z407 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CSMD3Q7Z407 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC14.52□□□□□ -0.09
CSMD3Q7Z407 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC14.52□□□□□ -0.09
CSMD3Q7Z407 AP001412.1-201ENST00000608405 714 ntBASIC14.52□□□□□ -0.09
CSMD3Q7Z407 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
CSMD3Q7Z407 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CSMD3Q7Z407 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 AC239809.2-201ENST00000415381 517 ntBASIC14.51□□□□□ -0.09
CSMD3Q7Z407 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 VMO1-204ENST00000441199 741 ntTSL 2 BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 AC105020.6-201ENST00000621523 1217 ntBASIC14.51□□□□□ -0.09
CSMD3Q7Z407 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 TPM1-226ENST00000560959 925 ntTSL 2 BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CSMD3Q7Z407 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
CSMD3Q7Z407 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CSMD3Q7Z407 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
CSMD3Q7Z407 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CSMD3Q7Z407 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CSMD3Q7Z407 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CSMD3Q7Z407 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CSMD3Q7Z407 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CSMD3Q7Z407 AC091799.1-201ENST00000422823 811 ntBASIC14.5□□□□□ -0.09
CSMD3Q7Z407 PENK-204ENST00000518770 863 ntTSL 2 BASIC14.5□□□□□ -0.09
CSMD3Q7Z407 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC14.5□□□□□ -0.09
CSMD3Q7Z407 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CSMD3Q7Z407 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CSMD3Q7Z407 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CSMD3Q7Z407 THEM4-205ENST00000489410 643 ntTSL 2 BASIC14.5□□□□□ -0.09
CSMD3Q7Z407 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC14.5□□□□□ -0.09
CSMD3Q7Z407 RARRES2P10-201ENST00000564312 460 ntBASIC14.5□□□□□ -0.09
CSMD3Q7Z407 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CSMD3Q7Z407 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
CSMD3Q7Z407 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CSMD3Q7Z407 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 MCRIP2P1-201ENST00000394346 511 ntBASIC14.49□□□□□ -0.09
CSMD3Q7Z407 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CSMD3Q7Z407 AC139530.1-201ENST00000575312 1977 ntBASIC14.48□□□□□ -0.09
CSMD3Q7Z407 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
CSMD3Q7Z407 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC14.48□□□□□ -0.09
CSMD3Q7Z407 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CSMD3Q7Z407 MFF-205ENST00000354503 1085 ntTSL 2 BASIC14.48□□□□□ -0.09
CSMD3Q7Z407 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC14.48□□□□□ -0.09
CSMD3Q7Z407 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC14.48□□□□□ -0.09
CSMD3Q7Z407 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
CSMD3Q7Z407 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CSMD3Q7Z407 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CSMD3Q7Z407 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CSMD3Q7Z407 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
CSMD3Q7Z407 AC068473.5-201ENST00000616428 2072 ntBASIC14.48□□□□□ -0.09
CSMD3Q7Z407 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CSMD3Q7Z407 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CSMD3Q7Z407 ARMC10P1-201ENST00000313754 855 ntBASIC14.48□□□□□ -0.09
CSMD3Q7Z407 AC113347.1-201ENST00000413321 391 ntBASIC14.48□□□□□ -0.09
CSMD3Q7Z407 AC005829.2-201ENST00000571422 1056 ntBASIC14.48□□□□□ -0.09
CSMD3Q7Z407 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC14.48□□□□□ -0.09
CSMD3Q7Z407 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
CSMD3Q7Z407 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC14.48□□□□□ -0.09
CSMD3Q7Z407 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CSMD3Q7Z407 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms