Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
CSPG4Q6UVK1 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CSPG4Q6UVK1 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.1■□□□□ 0.33
CSPG4Q6UVK1 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CSPG4Q6UVK1 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CSPG4Q6UVK1 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CSPG4Q6UVK1 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CSPG4Q6UVK1 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC17.1■□□□□ 0.33
CSPG4Q6UVK1 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CSPG4Q6UVK1 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CSPG4Q6UVK1 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CSPG4Q6UVK1 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC17.1■□□□□ 0.33
CSPG4Q6UVK1 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CSPG4Q6UVK1 C2orf69P4-201ENST00000565394 541 ntBASIC17.1■□□□□ 0.33
CSPG4Q6UVK1 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CSPG4Q6UVK1 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CSPG4Q6UVK1 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC17.1■□□□□ 0.33
CSPG4Q6UVK1 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC17.1■□□□□ 0.33
CSPG4Q6UVK1 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 AL023875.1-201ENST00000640777 796 ntBASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 AC124016.1-201ENST00000609552 612 ntBASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 AC120498.8-201ENST00000614275 531 ntBASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CSPG4Q6UVK1 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CSPG4Q6UVK1 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CSPG4Q6UVK1 AC245052.3-201ENST00000450182 901 ntBASIC17.08■□□□□ 0.33
CSPG4Q6UVK1 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CSPG4Q6UVK1 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CSPG4Q6UVK1 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.08■□□□□ 0.33
CSPG4Q6UVK1 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CSPG4Q6UVK1 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CSPG4Q6UVK1 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CSPG4Q6UVK1 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CSPG4Q6UVK1 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CSPG4Q6UVK1 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CSPG4Q6UVK1 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CSPG4Q6UVK1 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CSPG4Q6UVK1 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CSPG4Q6UVK1 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.08■□□□□ 0.32
CSPG4Q6UVK1 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.08■□□□□ 0.32
CSPG4Q6UVK1 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.08■□□□□ 0.32
CSPG4Q6UVK1 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CSPG4Q6UVK1 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.08■□□□□ 0.32
CSPG4Q6UVK1 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
CSPG4Q6UVK1 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.07■□□□□ 0.32
CSPG4Q6UVK1 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CSPG4Q6UVK1 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CSPG4Q6UVK1 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CSPG4Q6UVK1 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CSPG4Q6UVK1 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CSPG4Q6UVK1 RARRES2P10-201ENST00000564312 460 ntBASIC17.07■□□□□ 0.32
CSPG4Q6UVK1 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms