Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 NCF1B-203ENST00000435988 1254 ntBASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 AICDA-202ENST00000537228 667 ntTSL 5 BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 HCG11-201ENST00000411553 5696 ntBASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 LINC02228-203ENST00000641970 1355 ntBASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PDLIM3Q53GG5 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 FAM201B-201ENST00000458407 597 ntBASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 AC137761.2-201ENST00000561729 223 ntBASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 AC145350.3-201ENST00000569033 163 ntBASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PDLIM3Q53GG5 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 AL049796.1-201ENST00000565336 1766 ntBASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 SNX3-202ENST00000349379 890 ntTSL 2 BASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 CROCCP5-201ENST00000436658 830 ntBASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 KRT18P6-201ENST00000555540 1265 ntBASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 DYM-203ENST00000442713 2147 ntTSL 2 BASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms