Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.2■□□□□ 0.66
RFX4Q33E94 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.2■□□□□ 0.66
RFX4Q33E94 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
RFX4Q33E94 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFX4Q33E94 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFX4Q33E94 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RFX4Q33E94 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
RFX4Q33E94 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.2■□□□□ 0.66
RFX4Q33E94 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
RFX4Q33E94 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFX4Q33E94 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
RFX4Q33E94 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
RFX4Q33E94 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.19■□□□□ 0.66
RFX4Q33E94 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX4Q33E94 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX4Q33E94 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX4Q33E94 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.19■□□□□ 0.66
RFX4Q33E94 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX4Q33E94 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
RFX4Q33E94 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX4Q33E94 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
RFX4Q33E94 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
RFX4Q33E94 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX4Q33E94 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RFX4Q33E94 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.19■□□□□ 0.66
RFX4Q33E94 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX4Q33E94 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX4Q33E94 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX4Q33E94 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
RFX4Q33E94 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX4Q33E94 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX4Q33E94 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX4Q33E94 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.18■□□□□ 0.66
RFX4Q33E94 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.18■□□□□ 0.66
RFX4Q33E94 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX4Q33E94 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.18■□□□□ 0.66
RFX4Q33E94 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX4Q33E94 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
RFX4Q33E94 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.18■□□□□ 0.66
RFX4Q33E94 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.18■□□□□ 0.66
RFX4Q33E94 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFX4Q33E94 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX4Q33E94 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
RFX4Q33E94 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX4Q33E94 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX4Q33E94 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.18■□□□□ 0.66
RFX4Q33E94 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX4Q33E94 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.17■□□□□ 0.66
RFX4Q33E94 SMG8-203ENST00000578922 2178 ntBASIC19.17■□□□□ 0.66
RFX4Q33E94 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.17■□□□□ 0.66
RFX4Q33E94 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
RFX4Q33E94 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFX4Q33E94 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.17■□□□□ 0.66
RFX4Q33E94 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFX4Q33E94 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFX4Q33E94 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RFX4Q33E94 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.17■□□□□ 0.66
RFX4Q33E94 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.17■□□□□ 0.66
RFX4Q33E94 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
RFX4Q33E94 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFX4Q33E94 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
RFX4Q33E94 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFX4Q33E94 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFX4Q33E94 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFX4Q33E94 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX4Q33E94 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX4Q33E94 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.16■□□□□ 0.66
RFX4Q33E94 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.16■□□□□ 0.66
RFX4Q33E94 AP006587.3-201ENST00000525742 1516 ntBASIC19.16■□□□□ 0.66
RFX4Q33E94 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX4Q33E94 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX4Q33E94 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.16■□□□□ 0.66
RFX4Q33E94 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RFX4Q33E94 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RFX4Q33E94 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.16■□□□□ 0.66
RFX4Q33E94 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX4Q33E94 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX4Q33E94 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX4Q33E94 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
RFX4Q33E94 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
RFX4Q33E94 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
RFX4Q33E94 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
RFX4Q33E94 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFX4Q33E94 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.15■□□□□ 0.66
RFX4Q33E94 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.15■□□□□ 0.66
RFX4Q33E94 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFX4Q33E94 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFX4Q33E94 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RFX4Q33E94 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
RFX4Q33E94 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFX4Q33E94 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RFX4Q33E94 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
RFX4Q33E94 AC131281.2-201ENST00000520478 145 ntBASIC19.15■□□□□ 0.66
RFX4Q33E94 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RFX4Q33E94 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.15■□□□□ 0.66
RFX4Q33E94 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.15■□□□□ 0.66
RFX4Q33E94 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.15■□□□□ 0.66
RFX4Q33E94 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RFX4Q33E94 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFX4Q33E94 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms