Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC23.8■■□□□ 1.4
SF3A1Q15459 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SF3A1Q15459 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC23.8■■□□□ 1.4
SF3A1Q15459 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SF3A1Q15459 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SF3A1Q15459 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC23.8■■□□□ 1.4
SF3A1Q15459 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC23.8■■□□□ 1.4
SF3A1Q15459 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SF3A1Q15459 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
SF3A1Q15459 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SF3A1Q15459 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SF3A1Q15459 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC23.8■■□□□ 1.4
SF3A1Q15459 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC23.8■■□□□ 1.4
SF3A1Q15459 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SF3A1Q15459 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
SF3A1Q15459 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SF3A1Q15459 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SF3A1Q15459 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SF3A1Q15459 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SF3A1Q15459 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC23.79■■□□□ 1.4
SF3A1Q15459 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
SF3A1Q15459 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SF3A1Q15459 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SF3A1Q15459 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC23.79■■□□□ 1.4
SF3A1Q15459 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SF3A1Q15459 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SF3A1Q15459 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SF3A1Q15459 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
SF3A1Q15459 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC23.79■■□□□ 1.4
SF3A1Q15459 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SF3A1Q15459 LINC02228-203ENST00000641970 1355 ntBASIC23.78■■□□□ 1.4
SF3A1Q15459 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SF3A1Q15459 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SF3A1Q15459 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC23.78■■□□□ 1.4
SF3A1Q15459 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SF3A1Q15459 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SF3A1Q15459 AK1-201ENST00000223836 736 ntTSL 3 BASIC23.78■■□□□ 1.4
SF3A1Q15459 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SF3A1Q15459 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC23.78■■□□□ 1.4
SF3A1Q15459 AP004607.4-201ENST00000530158 1459 ntBASIC23.78■■□□□ 1.4
SF3A1Q15459 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SF3A1Q15459 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
SF3A1Q15459 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC23.78■■□□□ 1.4
SF3A1Q15459 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
SF3A1Q15459 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC23.78■■□□□ 1.4
SF3A1Q15459 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
SF3A1Q15459 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC23.78■■□□□ 1.4
SF3A1Q15459 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC23.78■■□□□ 1.4
SF3A1Q15459 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SF3A1Q15459 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SF3A1Q15459 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SF3A1Q15459 SERP1-208ENST00000491660 830 ntTSL 2 BASIC23.77■■□□□ 1.4
SF3A1Q15459 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SF3A1Q15459 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC23.77■■□□□ 1.4
SF3A1Q15459 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SF3A1Q15459 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC23.77■■□□□ 1.4
SF3A1Q15459 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
SF3A1Q15459 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
SF3A1Q15459 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
SF3A1Q15459 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
SF3A1Q15459 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SF3A1Q15459 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SF3A1Q15459 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
SF3A1Q15459 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SF3A1Q15459 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC23.76■■□□□ 1.39
SF3A1Q15459 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
SF3A1Q15459 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SF3A1Q15459 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
SF3A1Q15459 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC23.76■■□□□ 1.39
SF3A1Q15459 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC23.76■■□□□ 1.39
SF3A1Q15459 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SF3A1Q15459 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC23.76■■□□□ 1.39
SF3A1Q15459 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
SF3A1Q15459 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC23.76■■□□□ 1.39
SF3A1Q15459 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SF3A1Q15459 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC23.75■■□□□ 1.39
SF3A1Q15459 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
SF3A1Q15459 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
SF3A1Q15459 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SF3A1Q15459 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SF3A1Q15459 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC23.75■■□□□ 1.39
SF3A1Q15459 ZNRF2P3-201ENST00000424200 374 ntBASIC23.75■■□□□ 1.39
SF3A1Q15459 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
SF3A1Q15459 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
SF3A1Q15459 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC23.75■■□□□ 1.39
SF3A1Q15459 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SF3A1Q15459 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC23.75■■□□□ 1.39
SF3A1Q15459 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SF3A1Q15459 AC092667.1-201ENST00000434301 2586 ntBASIC23.75■■□□□ 1.39
SF3A1Q15459 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC23.75■■□□□ 1.39
SF3A1Q15459 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC23.74■■□□□ 1.39
SF3A1Q15459 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SF3A1Q15459 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC23.74■■□□□ 1.39
SF3A1Q15459 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
SF3A1Q15459 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
SF3A1Q15459 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SF3A1Q15459 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
SF3A1Q15459 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SF3A1Q15459 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC23.74■■□□□ 1.39
SF3A1Q15459 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms