Protein–RNA interactions for Protein: Q12766

HMGXB3, HMG domain-containing protein 3, humanhuman

Predictions only

Length 1,538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3Q12766 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC36.96■■■■□ 3.51
HMGXB3Q12766 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC36.96■■■■□ 3.51
HMGXB3Q12766 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC36.95■■■■□ 3.51
HMGXB3Q12766 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC36.95■■■■□ 3.51
HMGXB3Q12766 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC36.95■■■■□ 3.51
HMGXB3Q12766 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC36.95■■■■□ 3.51
HMGXB3Q12766 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC36.95■■■■□ 3.51
HMGXB3Q12766 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC36.95■■■■□ 3.51
HMGXB3Q12766 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC36.95■■■■□ 3.5
HMGXB3Q12766 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC36.95■■■■□ 3.5
HMGXB3Q12766 THEM4-205ENST00000489410 643 ntTSL 2 BASIC36.95■■■■□ 3.5
HMGXB3Q12766 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC36.95■■■■□ 3.5
HMGXB3Q12766 AP003071.4-201ENST00000562276 1284 ntBASIC36.95■■■■□ 3.5
HMGXB3Q12766 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC36.95■■■■□ 3.5
HMGXB3Q12766 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC36.94■■■■□ 3.5
HMGXB3Q12766 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC36.94■■■■□ 3.5
HMGXB3Q12766 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC36.94■■■■□ 3.5
HMGXB3Q12766 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC36.94■■■■□ 3.5
HMGXB3Q12766 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC36.94■■■■□ 3.5
HMGXB3Q12766 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC36.94■■■■□ 3.5
HMGXB3Q12766 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC36.94■■■■□ 3.5
HMGXB3Q12766 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC36.94■■■■□ 3.5
HMGXB3Q12766 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC36.94■■■■□ 3.5
HMGXB3Q12766 GCA-201ENST00000233612 1694 ntTSL 2 BASIC36.94■■■■□ 3.5
HMGXB3Q12766 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC36.94■■■■□ 3.5
HMGXB3Q12766 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC36.94■■■■□ 3.5
HMGXB3Q12766 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC36.93■■■■□ 3.5
HMGXB3Q12766 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC36.93■■■■□ 3.5
HMGXB3Q12766 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC36.93■■■■□ 3.5
HMGXB3Q12766 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC36.93■■■■□ 3.5
HMGXB3Q12766 RNF146-204ENST00000476956 884 ntTSL 2 BASIC36.93■■■■□ 3.5
HMGXB3Q12766 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC36.93■■■■□ 3.5
HMGXB3Q12766 MIR6786-201ENST00000616843 113 ntBASIC36.93■■■■□ 3.5
HMGXB3Q12766 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC36.93■■■■□ 3.5
HMGXB3Q12766 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC36.93■■■■□ 3.5
HMGXB3Q12766 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC36.92■■■■□ 3.5
HMGXB3Q12766 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC36.92■■■■□ 3.5
HMGXB3Q12766 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC36.92■■■■□ 3.5
HMGXB3Q12766 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC36.92■■■■□ 3.5
HMGXB3Q12766 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC36.92■■■■□ 3.5
HMGXB3Q12766 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC36.92■■■■□ 3.5
HMGXB3Q12766 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC36.92■■■■□ 3.5
HMGXB3Q12766 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC36.92■■■■□ 3.5
HMGXB3Q12766 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC36.92■■■■□ 3.5
HMGXB3Q12766 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC36.91■■■■□ 3.5
HMGXB3Q12766 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC36.91■■■■□ 3.5
HMGXB3Q12766 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC36.91■■■■□ 3.5
HMGXB3Q12766 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC36.91■■■■□ 3.5
HMGXB3Q12766 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC36.91■■■■□ 3.5
HMGXB3Q12766 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC36.9■■■■□ 3.5
HMGXB3Q12766 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC36.9■■■■□ 3.5
HMGXB3Q12766 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC36.9■■■■□ 3.5
HMGXB3Q12766 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC36.9■■■■□ 3.5
HMGXB3Q12766 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC36.9■■■■□ 3.5
HMGXB3Q12766 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC36.89■■■■□ 3.5
HMGXB3Q12766 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC36.89■■■■□ 3.5
HMGXB3Q12766 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC36.89■■■■□ 3.5
HMGXB3Q12766 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC36.89■■■■□ 3.5
HMGXB3Q12766 TPM1-226ENST00000560959 925 ntTSL 2 BASIC36.89■■■■□ 3.5
HMGXB3Q12766 AL049597.2-201ENST00000565575 961 ntBASIC36.89■■■■□ 3.5
HMGXB3Q12766 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC36.89■■■■□ 3.5
HMGXB3Q12766 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC36.89■■■■□ 3.5
HMGXB3Q12766 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC36.89■■■■□ 3.5
HMGXB3Q12766 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC36.89■■■■□ 3.5
HMGXB3Q12766 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC36.89■■■■□ 3.5
HMGXB3Q12766 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC36.89■■■■□ 3.5
HMGXB3Q12766 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC36.89■■■■□ 3.5
HMGXB3Q12766 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC36.88■■■■□ 3.49
HMGXB3Q12766 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC36.88■■■■□ 3.49
HMGXB3Q12766 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC36.88■■■■□ 3.49
HMGXB3Q12766 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC36.88■■■■□ 3.49
HMGXB3Q12766 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC36.88■■■■□ 3.49
HMGXB3Q12766 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC36.88■■■■□ 3.49
HMGXB3Q12766 RBM42-202ENST00000586618 771 ntTSL 3 BASIC36.88■■■■□ 3.49
HMGXB3Q12766 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC36.87■■■■□ 3.49
HMGXB3Q12766 AC113347.1-201ENST00000413321 391 ntBASIC36.87■■■■□ 3.49
HMGXB3Q12766 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC36.87■■■■□ 3.49
HMGXB3Q12766 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC36.87■■■■□ 3.49
HMGXB3Q12766 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC36.87■■■■□ 3.49
HMGXB3Q12766 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC36.87■■■■□ 3.49
HMGXB3Q12766 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC36.87■■■■□ 3.49
HMGXB3Q12766 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC36.87■■■■□ 3.49
HMGXB3Q12766 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC36.86■■■■□ 3.49
HMGXB3Q12766 RER1-204ENST00000378518 522 ntTSL 3 BASIC36.86■■■■□ 3.49
HMGXB3Q12766 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC36.86■■■■□ 3.49
HMGXB3Q12766 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC36.86■■■■□ 3.49
HMGXB3Q12766 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC36.86■■■■□ 3.49
HMGXB3Q12766 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC36.86■■■■□ 3.49
HMGXB3Q12766 MOK-233ENST00000524214 1539 ntTSL 2 BASIC36.86■■■■□ 3.49
HMGXB3Q12766 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC36.86■■■■□ 3.49
HMGXB3Q12766 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC36.86■■■■□ 3.49
HMGXB3Q12766 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC36.85■■■■□ 3.49
HMGXB3Q12766 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC36.85■■■■□ 3.49
HMGXB3Q12766 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC36.85■■■■□ 3.49
HMGXB3Q12766 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC36.85■■■■□ 3.49
HMGXB3Q12766 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC36.85■■■■□ 3.49
HMGXB3Q12766 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC36.85■■■■□ 3.49
HMGXB3Q12766 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC36.85■■■■□ 3.49
HMGXB3Q12766 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC36.85■■■■□ 3.49
HMGXB3Q12766 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC36.85■■■■□ 3.49
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms