Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PRKDCP78527 REXO2-208ENST00000539754 791 ntTSL 2 BASIC15.2■□□□□ 0.02
PRKDCP78527 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC15.2■□□□□ 0.02
PRKDCP78527 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PRKDCP78527 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
PRKDCP78527 AL390955.1-201ENST00000428694 934 ntBASIC15.2■□□□□ 0.02
PRKDCP78527 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PRKDCP78527 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
PRKDCP78527 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PRKDCP78527 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC15.2■□□□□ 0.02
PRKDCP78527 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC15.19■□□□□ 0.02
PRKDCP78527 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PRKDCP78527 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PRKDCP78527 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PRKDCP78527 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PRKDCP78527 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PRKDCP78527 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PRKDCP78527 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC15.19■□□□□ 0.02
PRKDCP78527 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC15.19■□□□□ 0.02
PRKDCP78527 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC15.19■□□□□ 0.02
PRKDCP78527 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC15.19■□□□□ 0.02
PRKDCP78527 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PRKDCP78527 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PRKDCP78527 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC15.19■□□□□ 0.02
PRKDCP78527 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PRKDCP78527 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
PRKDCP78527 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PRKDCP78527 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC15.19■□□□□ 0.02
PRKDCP78527 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
PRKDCP78527 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC15.19■□□□□ 0.02
PRKDCP78527 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC15.19■□□□□ 0.02
PRKDCP78527 AL358472.4-201ENST00000633140 710 ntBASIC15.19■□□□□ 0.02
PRKDCP78527 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC15.18■□□□□ 0.02
PRKDCP78527 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
PRKDCP78527 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
PRKDCP78527 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PRKDCP78527 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PRKDCP78527 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC15.18■□□□□ 0.02
PRKDCP78527 AP000347.1-202ENST00000435868 847 ntBASIC15.18■□□□□ 0.02
PRKDCP78527 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC15.18■□□□□ 0.02
PRKDCP78527 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC15.18■□□□□ 0.02
PRKDCP78527 AC004263.2-201ENST00000617183 678 ntBASIC15.18■□□□□ 0.02
PRKDCP78527 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC15.18■□□□□ 0.02
PRKDCP78527 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PRKDCP78527 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PRKDCP78527 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC15.18■□□□□ 0.02
PRKDCP78527 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
PRKDCP78527 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
PRKDCP78527 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PRKDCP78527 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PRKDCP78527 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC15.18■□□□□ 0.02
PRKDCP78527 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PRKDCP78527 AC027702.1-201ENST00000563810 1770 ntBASIC15.18■□□□□ 0.02
PRKDCP78527 AC138932.3-201ENST00000567634 1902 ntBASIC15.17■□□□□ 0.02
PRKDCP78527 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC15.17■□□□□ 0.02
PRKDCP78527 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC15.17■□□□□ 0.02
PRKDCP78527 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PRKDCP78527 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC15.17■□□□□ 0.02
PRKDCP78527 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
PRKDCP78527 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC15.17■□□□□ 0.02
PRKDCP78527 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC15.17■□□□□ 0.02
PRKDCP78527 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
PRKDCP78527 VMO1-204ENST00000441199 741 ntTSL 2 BASIC15.17■□□□□ 0.02
PRKDCP78527 VPS72-207ENST00000640458 689 ntTSL 5 BASIC15.17■□□□□ 0.02
PRKDCP78527 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PRKDCP78527 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PRKDCP78527 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC15.17■□□□□ 0.02
PRKDCP78527 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PRKDCP78527 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC15.16■□□□□ 0.02
PRKDCP78527 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
PRKDCP78527 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
PRKDCP78527 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PRKDCP78527 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PRKDCP78527 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
PRKDCP78527 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
PRKDCP78527 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
PRKDCP78527 FAM197Y1-201ENST00000421178 764 ntBASIC15.16■□□□□ 0.02
PRKDCP78527 RPS15-203ENST00000586096 570 ntTSL 2 BASIC15.16■□□□□ 0.02
PRKDCP78527 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PRKDCP78527 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PRKDCP78527 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PRKDCP78527 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
PRKDCP78527 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC15.16■□□□□ 0.02
PRKDCP78527 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PRKDCP78527 PRR31-201ENST00000371629 978 ntTSL 2 BASIC15.16■□□□□ 0.02
PRKDCP78527 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
PRKDCP78527 AC023511.2-201ENST00000618803 211 ntBASIC15.16■□□□□ 0.02
PRKDCP78527 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC15.16■□□□□ 0.02
PRKDCP78527 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC15.16■□□□□ 0.02
PRKDCP78527 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PRKDCP78527 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PRKDCP78527 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PRKDCP78527 MCRIP2P1-201ENST00000394346 511 ntBASIC15.15■□□□□ 0.02
PRKDCP78527 TMA16-209ENST00000513272 803 ntTSL 2 BASIC15.15■□□□□ 0.02
PRKDCP78527 CLN6-204ENST00000564752 900 ntTSL 3 BASIC15.15■□□□□ 0.02
PRKDCP78527 AC091076.1-201ENST00000610741 619 ntBASIC15.15■□□□□ 0.02
PRKDCP78527 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKDCP78527 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKDCP78527 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PRKDCP78527 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms