Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RAE1P78406 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RAE1P78406 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RAE1P78406 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.65■□□□□ 0.74
RAE1P78406 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.65■□□□□ 0.74
RAE1P78406 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.65■□□□□ 0.74
RAE1P78406 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.65■□□□□ 0.74
RAE1P78406 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.65■□□□□ 0.74
RAE1P78406 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
RAE1P78406 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RAE1P78406 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RAE1P78406 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RAE1P78406 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RAE1P78406 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
RAE1P78406 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
RAE1P78406 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.64■□□□□ 0.74
RAE1P78406 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
RAE1P78406 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
RAE1P78406 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
RAE1P78406 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
RAE1P78406 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
RAE1P78406 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
RAE1P78406 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
RAE1P78406 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RAE1P78406 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.64■□□□□ 0.73
RAE1P78406 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.64■□□□□ 0.73
RAE1P78406 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.64■□□□□ 0.73
RAE1P78406 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.64■□□□□ 0.73
RAE1P78406 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.64■□□□□ 0.73
RAE1P78406 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.64■□□□□ 0.73
RAE1P78406 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
RAE1P78406 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.64■□□□□ 0.73
RAE1P78406 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RAE1P78406 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
RAE1P78406 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RAE1P78406 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RAE1P78406 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.64■□□□□ 0.73
RAE1P78406 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
RAE1P78406 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RAE1P78406 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.63■□□□□ 0.73
RAE1P78406 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.63■□□□□ 0.73
RAE1P78406 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RAE1P78406 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.63■□□□□ 0.73
RAE1P78406 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RAE1P78406 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.63■□□□□ 0.73
RAE1P78406 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RAE1P78406 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.63■□□□□ 0.73
RAE1P78406 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RAE1P78406 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
RAE1P78406 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RAE1P78406 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RAE1P78406 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
RAE1P78406 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.63■□□□□ 0.73
RAE1P78406 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.63■□□□□ 0.73
RAE1P78406 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.63■□□□□ 0.73
RAE1P78406 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.62■□□□□ 0.73
RAE1P78406 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RAE1P78406 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RAE1P78406 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RAE1P78406 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RAE1P78406 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RAE1P78406 AC019069.1-201ENST00000610008 1333 ntBASIC19.62■□□□□ 0.73
RAE1P78406 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
RAE1P78406 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RAE1P78406 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RAE1P78406 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.62■□□□□ 0.73
RAE1P78406 AC097381.1-201ENST00000429019 1296 ntBASIC19.62■□□□□ 0.73
RAE1P78406 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.62■□□□□ 0.73
RAE1P78406 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RAE1P78406 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.62■□□□□ 0.73
RAE1P78406 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RAE1P78406 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RAE1P78406 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RAE1P78406 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
RAE1P78406 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.62■□□□□ 0.73
RAE1P78406 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.62■□□□□ 0.73
RAE1P78406 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.62■□□□□ 0.73
RAE1P78406 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.62■□□□□ 0.73
RAE1P78406 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.62■□□□□ 0.73
RAE1P78406 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.62■□□□□ 0.73
RAE1P78406 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
RAE1P78406 AL121603.2-201ENST00000557373 2117 ntBASIC19.61■□□□□ 0.73
RAE1P78406 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.61■□□□□ 0.73
RAE1P78406 RBM17P2-201ENST00000616397 1405 ntBASIC19.61■□□□□ 0.73
RAE1P78406 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.61■□□□□ 0.73
RAE1P78406 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RAE1P78406 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.61■□□□□ 0.73
RAE1P78406 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
RAE1P78406 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.61■□□□□ 0.73
RAE1P78406 AC020907.5-201ENST00000624372 1936 ntBASIC19.61■□□□□ 0.73
RAE1P78406 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RAE1P78406 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RAE1P78406 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.61■□□□□ 0.73
RAE1P78406 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RAE1P78406 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RAE1P78406 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RAE1P78406 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.61■□□□□ 0.73
RAE1P78406 KRT19P1-201ENST00000405746 1186 ntBASIC19.61■□□□□ 0.73
RAE1P78406 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
RAE1P78406 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms