Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC14.6□□□□□ -0.07
RPL39P62891 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
RPL39P62891 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC14.6□□□□□ -0.07
RPL39P62891 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RPL39P62891 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
RPL39P62891 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RPL39P62891 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
RPL39P62891 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RPL39P62891 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RPL39P62891 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RPL39P62891 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RPL39P62891 AC099778.1-201ENST00000568593 1911 ntBASIC14.59□□□□□ -0.07
RPL39P62891 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
RPL39P62891 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RPL39P62891 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RPL39P62891 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RPL39P62891 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
RPL39P62891 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
RPL39P62891 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RPL39P62891 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RPL39P62891 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RPL39P62891 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RPL39P62891 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RPL39P62891 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RPL39P62891 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RPL39P62891 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RPL39P62891 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC14.59□□□□□ -0.07
RPL39P62891 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
RPL39P62891 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
RPL39P62891 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.07
RPL39P62891 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
RPL39P62891 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RPL39P62891 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RPL39P62891 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC14.58□□□□□ -0.08
RPL39P62891 AL162377.1-201ENST00000618844 1793 ntBASIC14.58□□□□□ -0.08
RPL39P62891 MCC-208ENST00000514701 2855 ntTSL 2 BASIC14.58□□□□□ -0.08
RPL39P62891 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
RPL39P62891 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
RPL39P62891 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC14.58□□□□□ -0.08
RPL39P62891 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
RPL39P62891 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
RPL39P62891 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC14.58□□□□□ -0.08
RPL39P62891 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC14.58□□□□□ -0.08
RPL39P62891 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC14.58□□□□□ -0.08
RPL39P62891 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RPL39P62891 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
RPL39P62891 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RPL39P62891 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
RPL39P62891 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC14.58□□□□□ -0.08
RPL39P62891 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RPL39P62891 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RPL39P62891 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RPL39P62891 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RPL39P62891 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RPL39P62891 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC14.58□□□□□ -0.08
RPL39P62891 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
RPL39P62891 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
RPL39P62891 AL020996.1-203ENST00000536896 2307 ntBASIC14.58□□□□□ -0.08
RPL39P62891 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC14.58□□□□□ -0.08
RPL39P62891 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC14.58□□□□□ -0.08
RPL39P62891 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RPL39P62891 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
RPL39P62891 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC14.57□□□□□ -0.08
RPL39P62891 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC14.57□□□□□ -0.08
RPL39P62891 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RPL39P62891 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RPL39P62891 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RPL39P62891 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RPL39P62891 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RPL39P62891 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RPL39P62891 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC14.57□□□□□ -0.08
RPL39P62891 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC14.57□□□□□ -0.08
RPL39P62891 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RPL39P62891 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RPL39P62891 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RPL39P62891 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RPL39P62891 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RPL39P62891 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
RPL39P62891 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC14.57□□□□□ -0.08
RPL39P62891 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC14.57□□□□□ -0.08
RPL39P62891 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RPL39P62891 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
RPL39P62891 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
RPL39P62891 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RPL39P62891 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
RPL39P62891 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RPL39P62891 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RPL39P62891 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RPL39P62891 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC14.56□□□□□ -0.08
RPL39P62891 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
RPL39P62891 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RPL39P62891 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
RPL39P62891 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
RPL39P62891 AC138932.1-201ENST00000534164 6830 ntBASIC14.56□□□□□ -0.08
RPL39P62891 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
RPL39P62891 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RPL39P62891 UNC93B8-201ENST00000511903 705 ntBASIC14.56□□□□□ -0.08
RPL39P62891 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
RPL39P62891 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC14.56□□□□□ -0.08
RPL39P62891 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms