Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CXCL12P48061 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
CXCL12P48061 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
CXCL12P48061 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
CXCL12P48061 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
CXCL12P48061 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CXCL12P48061 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CXCL12P48061 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CXCL12P48061 AC087499.1-201ENST00000418141 1075 ntBASIC20.76■□□□□ 0.91
CXCL12P48061 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.76■□□□□ 0.91
CXCL12P48061 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CXCL12P48061 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CXCL12P48061 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.76■□□□□ 0.91
CXCL12P48061 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CXCL12P48061 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CXCL12P48061 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.75■□□□□ 0.91
CXCL12P48061 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
CXCL12P48061 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.75■□□□□ 0.91
CXCL12P48061 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CXCL12P48061 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
CXCL12P48061 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.75■□□□□ 0.91
CXCL12P48061 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.75■□□□□ 0.91
CXCL12P48061 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.75■□□□□ 0.91
CXCL12P48061 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.75■□□□□ 0.91
CXCL12P48061 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.75■□□□□ 0.91
CXCL12P48061 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CXCL12P48061 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CXCL12P48061 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CXCL12P48061 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CXCL12P48061 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CXCL12P48061 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CXCL12P48061 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CXCL12P48061 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.74■□□□□ 0.91
CXCL12P48061 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CXCL12P48061 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CXCL12P48061 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
CXCL12P48061 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CXCL12P48061 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CXCL12P48061 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.74■□□□□ 0.91
CXCL12P48061 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.74■□□□□ 0.91
CXCL12P48061 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CXCL12P48061 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CXCL12P48061 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.74■□□□□ 0.91
CXCL12P48061 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CXCL12P48061 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.74■□□□□ 0.91
CXCL12P48061 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CXCL12P48061 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
CXCL12P48061 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.73■□□□□ 0.91
CXCL12P48061 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CXCL12P48061 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CXCL12P48061 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.73■□□□□ 0.91
CXCL12P48061 KRASP1-201ENST00000407852 552 ntBASIC20.73■□□□□ 0.91
CXCL12P48061 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.73■□□□□ 0.91
CXCL12P48061 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
CXCL12P48061 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.73■□□□□ 0.91
CXCL12P48061 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.73■□□□□ 0.91
CXCL12P48061 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.73■□□□□ 0.91
CXCL12P48061 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.73■□□□□ 0.91
CXCL12P48061 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CXCL12P48061 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CXCL12P48061 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.73■□□□□ 0.91
CXCL12P48061 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.73■□□□□ 0.91
CXCL12P48061 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.73■□□□□ 0.91
CXCL12P48061 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CXCL12P48061 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CXCL12P48061 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
CXCL12P48061 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CXCL12P48061 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CXCL12P48061 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CXCL12P48061 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.73■□□□□ 0.91
CXCL12P48061 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.73■□□□□ 0.91
CXCL12P48061 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CXCL12P48061 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CXCL12P48061 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CXCL12P48061 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CXCL12P48061 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CXCL12P48061 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CXCL12P48061 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CXCL12P48061 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CXCL12P48061 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CXCL12P48061 AC116050.2-201ENST00000612102 1779 ntBASIC20.72■□□□□ 0.91
CXCL12P48061 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CXCL12P48061 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CXCL12P48061 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CXCL12P48061 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CXCL12P48061 TSPY15P-201ENST00000457163 923 ntBASIC20.72■□□□□ 0.91
CXCL12P48061 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.72■□□□□ 0.91
CXCL12P48061 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.72■□□□□ 0.91
CXCL12P48061 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.72■□□□□ 0.91
CXCL12P48061 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CXCL12P48061 AC113410.3-201ENST00000623366 203 ntBASIC20.72■□□□□ 0.91
CXCL12P48061 AC097493.4-201ENST00000641197 219 ntBASIC20.72■□□□□ 0.91
CXCL12P48061 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CXCL12P48061 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CXCL12P48061 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CXCL12P48061 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CXCL12P48061 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CXCL12P48061 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CXCL12P48061 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20.71■□□□□ 0.91
CXCL12P48061 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms