Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC26.2■■□□□ 1.78
RFC4P35249 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
RFC4P35249 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
RFC4P35249 CBFB-203ENST00000561924 584 ntTSL 5 BASIC26.2■■□□□ 1.78
RFC4P35249 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
RFC4P35249 AC133561.5-201ENST00000635547 218 ntBASIC26.2■■□□□ 1.78
RFC4P35249 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC26.2■■□□□ 1.78
RFC4P35249 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
RFC4P35249 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
RFC4P35249 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC26.2■■□□□ 1.78
RFC4P35249 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC26.2■■□□□ 1.78
RFC4P35249 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
RFC4P35249 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC26.19■■□□□ 1.78
RFC4P35249 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC26.19■■□□□ 1.78
RFC4P35249 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC26.19■■□□□ 1.78
RFC4P35249 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
RFC4P35249 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC26.19■■□□□ 1.78
RFC4P35249 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC26.19■■□□□ 1.78
RFC4P35249 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
RFC4P35249 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
RFC4P35249 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
RFC4P35249 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC26.19■■□□□ 1.78
RFC4P35249 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC26.19■■□□□ 1.78
RFC4P35249 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
RFC4P35249 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
RFC4P35249 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC26.18■■□□□ 1.78
RFC4P35249 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
RFC4P35249 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RFC4P35249 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC26.18■■□□□ 1.78
RFC4P35249 GGT1-206ENST00000404223 952 ntTSL 2 BASIC26.18■■□□□ 1.78
RFC4P35249 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
RFC4P35249 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC26.18■■□□□ 1.78
RFC4P35249 DHDH-203ENST00000522614 776 ntTSL 5 BASIC26.18■■□□□ 1.78
RFC4P35249 AL135905.2-201ENST00000584934 1404 ntBASIC26.18■■□□□ 1.78
RFC4P35249 MIR4785-201ENST00000585005 73 ntBASIC26.18■■□□□ 1.78
RFC4P35249 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RFC4P35249 AC120498.8-201ENST00000614275 531 ntBASIC26.18■■□□□ 1.78
RFC4P35249 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RFC4P35249 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RFC4P35249 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC26.18■■□□□ 1.78
RFC4P35249 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RFC4P35249 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RFC4P35249 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC26.18■■□□□ 1.78
RFC4P35249 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
RFC4P35249 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC26.17■■□□□ 1.78
RFC4P35249 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
RFC4P35249 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC26.17■■□□□ 1.78
RFC4P35249 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
RFC4P35249 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
RFC4P35249 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
RFC4P35249 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
RFC4P35249 AC116050.2-201ENST00000612102 1779 ntBASIC26.17■■□□□ 1.78
RFC4P35249 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RFC4P35249 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC26.17■■□□□ 1.78
RFC4P35249 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RFC4P35249 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
RFC4P35249 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC26.16■■□□□ 1.78
RFC4P35249 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC26.16■■□□□ 1.78
RFC4P35249 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
RFC4P35249 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
RFC4P35249 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
RFC4P35249 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
RFC4P35249 TSPY15P-201ENST00000457163 923 ntBASIC26.16■■□□□ 1.78
RFC4P35249 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC26.16■■□□□ 1.78
RFC4P35249 AC110285.5-201ENST00000611501 352 ntBASIC26.16■■□□□ 1.78
RFC4P35249 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
RFC4P35249 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
RFC4P35249 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
RFC4P35249 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC26.15■■□□□ 1.78
RFC4P35249 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC26.15■■□□□ 1.78
RFC4P35249 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC26.15■■□□□ 1.78
RFC4P35249 AC087499.1-201ENST00000418141 1075 ntBASIC26.15■■□□□ 1.78
RFC4P35249 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC26.15■■□□□ 1.78
RFC4P35249 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC26.15■■□□□ 1.78
RFC4P35249 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
RFC4P35249 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC26.15■■□□□ 1.78
RFC4P35249 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
RFC4P35249 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC26.15■■□□□ 1.78
RFC4P35249 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC26.15■■□□□ 1.78
RFC4P35249 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
RFC4P35249 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
RFC4P35249 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC26.14■■□□□ 1.78
RFC4P35249 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
RFC4P35249 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.78
RFC4P35249 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC26.14■■□□□ 1.78
RFC4P35249 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC26.14■■□□□ 1.78
RFC4P35249 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.78
RFC4P35249 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.78
RFC4P35249 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
RFC4P35249 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
RFC4P35249 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
RFC4P35249 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.77
RFC4P35249 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC26.14■■□□□ 1.77
RFC4P35249 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.77
RFC4P35249 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
RFC4P35249 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC26.14■■□□□ 1.77
RFC4P35249 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.77
RFC4P35249 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC26.13■■□□□ 1.77
RFC4P35249 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC26.13■■□□□ 1.77
RFC4P35249 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms