Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHMT2P34897 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHMT2P34897 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.24■□□□□ 0.83
SHMT2P34897 AC090192.1-201ENST00000517740 490 ntBASIC20.24■□□□□ 0.83
SHMT2P34897 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
SHMT2P34897 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.24■□□□□ 0.83
SHMT2P34897 AC243732.1-201ENST00000612648 864 ntBASIC20.24■□□□□ 0.83
SHMT2P34897 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.24■□□□□ 0.83
SHMT2P34897 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
SHMT2P34897 RBM17P2-201ENST00000616397 1405 ntBASIC20.24■□□□□ 0.83
SHMT2P34897 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHMT2P34897 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHMT2P34897 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHMT2P34897 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
SHMT2P34897 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
SHMT2P34897 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.23■□□□□ 0.83
SHMT2P34897 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SHMT2P34897 AC092667.1-201ENST00000434301 2586 ntBASIC20.23■□□□□ 0.83
SHMT2P34897 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHMT2P34897 AC007322.1-201ENST00000426983 750 ntBASIC20.23■□□□□ 0.83
SHMT2P34897 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SHMT2P34897 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.23■□□□□ 0.83
SHMT2P34897 RAP2CP1-201ENST00000605103 478 ntBASIC20.23■□□□□ 0.83
SHMT2P34897 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.23■□□□□ 0.83
SHMT2P34897 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SHMT2P34897 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
SHMT2P34897 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHMT2P34897 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
SHMT2P34897 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHMT2P34897 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHMT2P34897 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHMT2P34897 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHMT2P34897 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.22■□□□□ 0.83
SHMT2P34897 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHMT2P34897 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHMT2P34897 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHMT2P34897 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHMT2P34897 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.22■□□□□ 0.83
SHMT2P34897 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.22■□□□□ 0.83
SHMT2P34897 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHMT2P34897 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHMT2P34897 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.22■□□□□ 0.83
SHMT2P34897 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHMT2P34897 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHMT2P34897 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHMT2P34897 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHMT2P34897 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
SHMT2P34897 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHMT2P34897 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHMT2P34897 PKD1P6-201ENST00000343738 4769 ntBASIC20.21■□□□□ 0.83
SHMT2P34897 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SHMT2P34897 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.21■□□□□ 0.83
SHMT2P34897 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.21■□□□□ 0.83
SHMT2P34897 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
SHMT2P34897 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHMT2P34897 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHMT2P34897 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHMT2P34897 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
SHMT2P34897 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHMT2P34897 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHMT2P34897 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.21■□□□□ 0.83
SHMT2P34897 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.21■□□□□ 0.83
SHMT2P34897 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHMT2P34897 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHMT2P34897 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHMT2P34897 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.2■□□□□ 0.82
SHMT2P34897 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHMT2P34897 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.2■□□□□ 0.82
SHMT2P34897 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.2■□□□□ 0.82
SHMT2P34897 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHMT2P34897 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.2■□□□□ 0.82
SHMT2P34897 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
SHMT2P34897 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.2■□□□□ 0.82
SHMT2P34897 CNN2P6-201ENST00000439038 900 ntBASIC20.2■□□□□ 0.82
SHMT2P34897 AC007322.4-201ENST00000509611 723 ntBASIC20.2■□□□□ 0.82
SHMT2P34897 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.2■□□□□ 0.82
SHMT2P34897 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.2■□□□□ 0.82
SHMT2P34897 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.2■□□□□ 0.82
SHMT2P34897 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHMT2P34897 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHMT2P34897 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHMT2P34897 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHMT2P34897 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.2■□□□□ 0.82
SHMT2P34897 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHMT2P34897 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.19■□□□□ 0.82
SHMT2P34897 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SHMT2P34897 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHMT2P34897 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHMT2P34897 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.19■□□□□ 0.82
SHMT2P34897 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SHMT2P34897 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.19■□□□□ 0.82
SHMT2P34897 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHMT2P34897 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.19■□□□□ 0.82
SHMT2P34897 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SHMT2P34897 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SHMT2P34897 AL157384.1-201ENST00000445995 2473 ntBASIC20.19■□□□□ 0.82
SHMT2P34897 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHMT2P34897 Z98882.1-201ENST00000622160 2253 ntBASIC20.19■□□□□ 0.82
SHMT2P34897 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHMT2P34897 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms