Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CIITAP33076 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC23.39■■□□□ 1.33
CIITAP33076 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CIITAP33076 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CIITAP33076 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC23.38■■□□□ 1.33
CIITAP33076 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
CIITAP33076 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
CIITAP33076 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CIITAP33076 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CIITAP33076 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC23.38■■□□□ 1.33
CIITAP33076 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC23.38■■□□□ 1.33
CIITAP33076 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CIITAP33076 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CIITAP33076 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CIITAP33076 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CIITAP33076 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CIITAP33076 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CIITAP33076 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CIITAP33076 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CIITAP33076 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CIITAP33076 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CIITAP33076 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
CIITAP33076 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC23.37■■□□□ 1.33
CIITAP33076 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC23.37■■□□□ 1.33
CIITAP33076 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CIITAP33076 MKRN4P-201ENST00000444706 1521 ntBASIC23.37■■□□□ 1.33
CIITAP33076 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
CIITAP33076 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CIITAP33076 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CIITAP33076 AF106564.1-201ENST00000607058 2553 ntBASIC23.36■■□□□ 1.33
CIITAP33076 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC23.36■■□□□ 1.33
CIITAP33076 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC23.36■■□□□ 1.33
CIITAP33076 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC23.36■■□□□ 1.33
CIITAP33076 EMC9-206ENST00000560403 872 ntTSL 2 BASIC23.36■■□□□ 1.33
CIITAP33076 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
CIITAP33076 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
CIITAP33076 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CIITAP33076 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CIITAP33076 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC23.36■■□□□ 1.33
CIITAP33076 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CIITAP33076 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
CIITAP33076 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CIITAP33076 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CIITAP33076 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CIITAP33076 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CIITAP33076 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC23.35■■□□□ 1.33
CIITAP33076 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CIITAP33076 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
CIITAP33076 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC23.35■■□□□ 1.33
CIITAP33076 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CIITAP33076 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CIITAP33076 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC23.35■■□□□ 1.33
CIITAP33076 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
CIITAP33076 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CIITAP33076 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
CIITAP33076 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
CIITAP33076 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC23.34■■□□□ 1.33
CIITAP33076 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC23.34■■□□□ 1.33
CIITAP33076 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC23.34■■□□□ 1.33
CIITAP33076 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC23.34■■□□□ 1.33
CIITAP33076 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC23.34■■□□□ 1.33
CIITAP33076 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CIITAP33076 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CIITAP33076 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CIITAP33076 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CIITAP33076 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
CIITAP33076 CYP21A1P-202ENST00000354927 1481 ntBASIC23.33■■□□□ 1.33
CIITAP33076 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CIITAP33076 SLC29A4P1-201ENST00000398760 971 ntBASIC23.33■■□□□ 1.33
CIITAP33076 MIPEPP3-201ENST00000412105 444 ntBASIC23.33■■□□□ 1.33
CIITAP33076 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC23.33■■□□□ 1.33
CIITAP33076 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC23.33■■□□□ 1.33
CIITAP33076 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CIITAP33076 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC23.33■■□□□ 1.33
CIITAP33076 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC23.33■■□□□ 1.33
CIITAP33076 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CIITAP33076 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CIITAP33076 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CIITAP33076 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
CIITAP33076 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
CIITAP33076 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CIITAP33076 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CIITAP33076 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC23.32■■□□□ 1.32
CIITAP33076 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
CIITAP33076 MCRIP2P1-201ENST00000394346 511 ntBASIC23.32■■□□□ 1.32
CIITAP33076 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CIITAP33076 PHB2-213ENST00000546111 858 ntTSL 2 BASIC23.32■■□□□ 1.32
CIITAP33076 AL138781.1-201ENST00000566567 1274 ntBASIC23.32■■□□□ 1.32
CIITAP33076 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC23.32■■□□□ 1.32
CIITAP33076 CYP2T3P-201ENST00000601990 817 ntBASIC23.32■■□□□ 1.32
CIITAP33076 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CIITAP33076 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CIITAP33076 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CIITAP33076 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
CIITAP33076 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC23.32■■□□□ 1.32
CIITAP33076 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC23.32■■□□□ 1.32
CIITAP33076 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
CIITAP33076 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
CIITAP33076 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC23.32■■□□□ 1.32
CIITAP33076 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms