Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
USF1P22415 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USF1P22415 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
USF1P22415 MYB-221ENST00000527615 2381 ntTSL 5 BASIC17.5■□□□□ 0.39
USF1P22415 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC17.5■□□□□ 0.39
USF1P22415 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
USF1P22415 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
USF1P22415 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.5■□□□□ 0.39
USF1P22415 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
USF1P22415 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
USF1P22415 BET1L-207ENST00000529614 560 ntTSL 5 BASIC17.5■□□□□ 0.39
USF1P22415 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
USF1P22415 AC083880.1-201ENST00000608266 535 ntBASIC17.5■□□□□ 0.39
USF1P22415 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC17.5■□□□□ 0.39
USF1P22415 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC17.5■□□□□ 0.39
USF1P22415 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USF1P22415 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
USF1P22415 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
USF1P22415 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC17.5■□□□□ 0.39
USF1P22415 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USF1P22415 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
USF1P22415 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USF1P22415 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USF1P22415 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USF1P22415 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USF1P22415 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
USF1P22415 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
USF1P22415 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC17.49■□□□□ 0.39
USF1P22415 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USF1P22415 PRORSD1P-201ENST00000295112 541 ntBASIC17.49■□□□□ 0.39
USF1P22415 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
USF1P22415 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USF1P22415 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USF1P22415 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
USF1P22415 AC091874.3-201ENST00000512672 1195 ntBASIC17.49■□□□□ 0.39
USF1P22415 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
USF1P22415 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC17.49■□□□□ 0.39
USF1P22415 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.49■□□□□ 0.39
USF1P22415 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USF1P22415 MYC-209ENST00000641252 345 ntBASIC17.49■□□□□ 0.39
USF1P22415 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USF1P22415 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USF1P22415 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USF1P22415 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USF1P22415 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USF1P22415 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USF1P22415 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
USF1P22415 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
USF1P22415 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
USF1P22415 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC17.48■□□□□ 0.39
USF1P22415 EFS-203ENST00000429593 2610 ntTSL 2 BASIC17.48■□□□□ 0.39
USF1P22415 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
USF1P22415 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USF1P22415 ESRRAP1-201ENST00000400596 1257 ntBASIC17.48■□□□□ 0.39
USF1P22415 SERPINH1P1-201ENST00000419794 1249 ntBASIC17.48■□□□□ 0.39
USF1P22415 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC17.48■□□□□ 0.39
USF1P22415 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC17.48■□□□□ 0.39
USF1P22415 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
USF1P22415 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
USF1P22415 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USF1P22415 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USF1P22415 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USF1P22415 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USF1P22415 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USF1P22415 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
USF1P22415 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USF1P22415 AC061975.6-201ENST00000579045 1553 ntBASIC17.48■□□□□ 0.39
USF1P22415 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC17.48■□□□□ 0.39
USF1P22415 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
USF1P22415 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USF1P22415 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USF1P22415 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USF1P22415 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USF1P22415 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USF1P22415 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USF1P22415 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USF1P22415 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USF1P22415 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
USF1P22415 DUSP5P2-201ENST00000426873 1033 ntBASIC17.47■□□□□ 0.39
USF1P22415 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.47■□□□□ 0.39
USF1P22415 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC17.47■□□□□ 0.39
USF1P22415 AL024507.2-201ENST00000606070 2574 ntBASIC17.47■□□□□ 0.39
USF1P22415 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
USF1P22415 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USF1P22415 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USF1P22415 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USF1P22415 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USF1P22415 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USF1P22415 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
USF1P22415 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC17.46■□□□□ 0.39
USF1P22415 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USF1P22415 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
USF1P22415 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USF1P22415 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC17.46■□□□□ 0.39
USF1P22415 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
USF1P22415 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USF1P22415 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USF1P22415 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USF1P22415 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USF1P22415 LSM12P1-201ENST00000411836 588 ntBASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms