Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.57■□□□□ 0.88
MSH3P20585 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.57■□□□□ 0.88
MSH3P20585 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.57■□□□□ 0.88
MSH3P20585 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.57■□□□□ 0.88
MSH3P20585 AC243732.1-201ENST00000612648 864 ntBASIC20.57■□□□□ 0.88
MSH3P20585 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
MSH3P20585 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH3P20585 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.56■□□□□ 0.88
MSH3P20585 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.56■□□□□ 0.88
MSH3P20585 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.56■□□□□ 0.88
MSH3P20585 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH3P20585 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH3P20585 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
MSH3P20585 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.56■□□□□ 0.88
MSH3P20585 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.56■□□□□ 0.88
MSH3P20585 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.56■□□□□ 0.88
MSH3P20585 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.56■□□□□ 0.88
MSH3P20585 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.56■□□□□ 0.88
MSH3P20585 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.56■□□□□ 0.88
MSH3P20585 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.56■□□□□ 0.88
MSH3P20585 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
MSH3P20585 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.56■□□□□ 0.88
MSH3P20585 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH3P20585 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.56■□□□□ 0.88
MSH3P20585 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
MSH3P20585 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
MSH3P20585 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
MSH3P20585 AL049796.1-201ENST00000565336 1766 ntBASIC20.55■□□□□ 0.88
MSH3P20585 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH3P20585 DUX4L16-201ENST00000555130 1264 ntBASIC20.55■□□□□ 0.88
MSH3P20585 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH3P20585 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH3P20585 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH3P20585 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
MSH3P20585 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH3P20585 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.55■□□□□ 0.88
MSH3P20585 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH3P20585 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH3P20585 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
MSH3P20585 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH3P20585 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH3P20585 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.55■□□□□ 0.88
MSH3P20585 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSH3P20585 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.54■□□□□ 0.88
MSH3P20585 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MSH3P20585 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.54■□□□□ 0.88
MSH3P20585 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.54■□□□□ 0.88
MSH3P20585 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSH3P20585 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSH3P20585 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.54■□□□□ 0.88
MSH3P20585 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MSH3P20585 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.54■□□□□ 0.88
MSH3P20585 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MSH3P20585 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.54■□□□□ 0.88
MSH3P20585 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
MSH3P20585 AC231657.2-201ENST00000624556 255 ntBASIC20.54■□□□□ 0.88
MSH3P20585 AC013268.1-206ENST00000638368 961 ntBASIC20.54■□□□□ 0.88
MSH3P20585 AC112229.1-201ENST00000639295 961 ntBASIC20.54■□□□□ 0.88
MSH3P20585 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MSH3P20585 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
MSH3P20585 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSH3P20585 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.54■□□□□ 0.88
MSH3P20585 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSH3P20585 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MSH3P20585 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.53■□□□□ 0.88
MSH3P20585 AF106564.1-201ENST00000607058 2553 ntBASIC20.53■□□□□ 0.88
MSH3P20585 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MSH3P20585 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
MSH3P20585 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.53■□□□□ 0.88
MSH3P20585 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.53■□□□□ 0.88
MSH3P20585 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH3P20585 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.53■□□□□ 0.88
MSH3P20585 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.53■□□□□ 0.88
MSH3P20585 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.53■□□□□ 0.88
MSH3P20585 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.53■□□□□ 0.88
MSH3P20585 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.53■□□□□ 0.88
MSH3P20585 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
MSH3P20585 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
MSH3P20585 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
MSH3P20585 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
MSH3P20585 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
MSH3P20585 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.52■□□□□ 0.88
MSH3P20585 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
MSH3P20585 AC007322.1-201ENST00000426983 750 ntBASIC20.52■□□□□ 0.88
MSH3P20585 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.52■□□□□ 0.88
MSH3P20585 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.52■□□□□ 0.88
MSH3P20585 AC073111.5-205ENST00000641717 521 ntBASIC20.52■□□□□ 0.88
MSH3P20585 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.88
MSH3P20585 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.52■□□□□ 0.88
MSH3P20585 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.52■□□□□ 0.87
MSH3P20585 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
MSH3P20585 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
MSH3P20585 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSH3P20585 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
MSH3P20585 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MSH3P20585 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSH3P20585 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSH3P20585 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
MSH3P20585 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSH3P20585 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms