Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 AC004408.2-201ENST00000623613 2777 ntBASIC15.54■□□□□ 0.08
HLA-DQA1P01909 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 AF131216.4-201ENST00000638924 1588 ntBASIC15.54■□□□□ 0.08
HLA-DQA1P01909 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 THA1P-201ENST00000590384 1145 ntBASIC15.54■□□□□ 0.08
HLA-DQA1P01909 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
HLA-DQA1P01909 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 AC099778.1-201ENST00000568593 1911 ntBASIC15.53■□□□□ 0.08
HLA-DQA1P01909 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 ASB1-202ENST00000409297 878 ntTSL 5 BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 PVT1_1.1-201ENST00000615125 194 ntBASIC15.53■□□□□ 0.08
HLA-DQA1P01909 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC15.53■□□□□ 0.08
HLA-DQA1P01909 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC15.52■□□□□ 0.08
HLA-DQA1P01909 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC15.52■□□□□ 0.08
HLA-DQA1P01909 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DQA1P01909 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DQA1P01909 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DQA1P01909 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DQA1P01909 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DQA1P01909 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DQA1P01909 AC007225.1-201ENST00000566331 1836 ntBASIC15.52■□□□□ 0.08
HLA-DQA1P01909 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DQA1P01909 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DQA1P01909 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DQA1P01909 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC15.52■□□□□ 0.08
HLA-DQA1P01909 AL512408.1-201ENST00000569378 2000 ntBASIC15.52■□□□□ 0.08
HLA-DQA1P01909 IDNK-201ENST00000376417 511 ntTSL 5 BASIC15.52■□□□□ 0.08
HLA-DQA1P01909 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DQA1P01909 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DQA1P01909 AC079089.2-201ENST00000531211 1277 ntBASIC15.52■□□□□ 0.08
HLA-DQA1P01909 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC15.52■□□□□ 0.08
HLA-DQA1P01909 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC15.52■□□□□ 0.08
HLA-DQA1P01909 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC15.52■□□□□ 0.08
HLA-DQA1P01909 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
HLA-DQA1P01909 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
HLA-DQA1P01909 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HLA-DQA1P01909 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC15.52■□□□□ 0.07
HLA-DQA1P01909 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HLA-DQA1P01909 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HLA-DQA1P01909 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.07
HLA-DQA1P01909 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HLA-DQA1P01909 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
HLA-DQA1P01909 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HLA-DQA1P01909 OR7E47P-201ENST00000546390 1422 ntBASIC15.51■□□□□ 0.07
HLA-DQA1P01909 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
HLA-DQA1P01909 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DQA1P01909 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
HLA-DQA1P01909 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DQA1P01909 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HLA-DQA1P01909 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC15.51■□□□□ 0.07
HLA-DQA1P01909 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms