Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TOP3BO95985 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TOP3BO95985 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TOP3BO95985 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
TOP3BO95985 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.13■□□□□ 0.97
TOP3BO95985 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
TOP3BO95985 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
TOP3BO95985 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.13■□□□□ 0.97
TOP3BO95985 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
TOP3BO95985 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.13■□□□□ 0.97
TOP3BO95985 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.13■□□□□ 0.97
TOP3BO95985 OXCT2P1-201ENST00000447263 1535 ntBASIC21.13■□□□□ 0.97
TOP3BO95985 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.13■□□□□ 0.97
TOP3BO95985 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TOP3BO95985 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TOP3BO95985 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TOP3BO95985 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.12■□□□□ 0.97
TOP3BO95985 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
TOP3BO95985 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
TOP3BO95985 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TOP3BO95985 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TOP3BO95985 RNA5SP413-201ENST00000516373 109 ntBASIC21.12■□□□□ 0.97
TOP3BO95985 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC21.12■□□□□ 0.97
TOP3BO95985 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
TOP3BO95985 AC068587.7-201ENST00000641602 218 ntBASIC21.12■□□□□ 0.97
TOP3BO95985 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.12■□□□□ 0.97
TOP3BO95985 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
TOP3BO95985 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.11■□□□□ 0.97
TOP3BO95985 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
TOP3BO95985 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.11■□□□□ 0.97
TOP3BO95985 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
TOP3BO95985 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TOP3BO95985 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.11■□□□□ 0.97
TOP3BO95985 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.11■□□□□ 0.97
TOP3BO95985 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TOP3BO95985 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TOP3BO95985 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.11■□□□□ 0.97
TOP3BO95985 AL596275.1-201ENST00000423464 877 ntBASIC21.11■□□□□ 0.97
TOP3BO95985 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TOP3BO95985 AC098590.1-201ENST00000468126 897 ntBASIC21.11■□□□□ 0.97
TOP3BO95985 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TOP3BO95985 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TOP3BO95985 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.11■□□□□ 0.97
TOP3BO95985 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TOP3BO95985 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TOP3BO95985 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
TOP3BO95985 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TOP3BO95985 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TOP3BO95985 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.11■□□□□ 0.97
TOP3BO95985 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TOP3BO95985 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.11■□□□□ 0.97
TOP3BO95985 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.1■□□□□ 0.97
TOP3BO95985 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.1■□□□□ 0.97
TOP3BO95985 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TOP3BO95985 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
TOP3BO95985 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TOP3BO95985 AC079140.4-201ENST00000507448 529 ntBASIC21.1■□□□□ 0.97
TOP3BO95985 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
TOP3BO95985 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TOP3BO95985 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.1■□□□□ 0.97
TOP3BO95985 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TOP3BO95985 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
TOP3BO95985 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.09■□□□□ 0.97
TOP3BO95985 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
TOP3BO95985 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.09■□□□□ 0.97
TOP3BO95985 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TOP3BO95985 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TOP3BO95985 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
TOP3BO95985 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC21.09■□□□□ 0.97
TOP3BO95985 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.09■□□□□ 0.97
TOP3BO95985 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
TOP3BO95985 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.09■□□□□ 0.97
TOP3BO95985 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TOP3BO95985 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.09■□□□□ 0.97
TOP3BO95985 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TOP3BO95985 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TOP3BO95985 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TOP3BO95985 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TOP3BO95985 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
TOP3BO95985 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.09■□□□□ 0.97
TOP3BO95985 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TOP3BO95985 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TOP3BO95985 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TOP3BO95985 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TOP3BO95985 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TOP3BO95985 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.08■□□□□ 0.96
TOP3BO95985 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.08■□□□□ 0.96
TOP3BO95985 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TOP3BO95985 AP004607.7-201ENST00000527152 1677 ntBASIC21.08■□□□□ 0.96
TOP3BO95985 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TOP3BO95985 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.96
TOP3BO95985 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TOP3BO95985 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TOP3BO95985 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
TOP3BO95985 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TOP3BO95985 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TOP3BO95985 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
TOP3BO95985 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TOP3BO95985 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TOP3BO95985 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms