Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC14.28□□□□□ -0.121e-8■■■■■ 160.4
SF3B1O75533 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC14.21□□□□□ -0.131e-8■■■■■ 160.4
SF3B1O75533 LPIN1-208ENST00000441684 599 ntTSL 414.2□□□□□ -0.141e-8■■■■■ 160.4
SF3B1O75533 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.161e-8■■■■■ 160.4
SF3B1O75533 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC14□□□□□ -0.171e-8■■■■■ 160.4
SF3B1O75533 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC13.97□□□□□ -0.171e-8■■■■■ 160.4
SF3B1O75533 ARRDC3-AS1-203ENST00000630823 737 ntTSL 313.93□□□□□ -0.181e-8■■■■■ 160.4
SF3B1O75533 SH2D6-207ENST00000481426 990 ntTSL 1 (best)13.92□□□□□ -0.181e-8■■■■■ 160.4
SF3B1O75533 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.191e-8■■■■■ 160.4
SF3B1O75533 MIR193BHG-211ENST00000641433 5365 ntBASIC13.83□□□□□ -0.21e-8■■■■■ 160.4
SF3B1O75533 TMCO6-211ENST00000513002 542 ntTSL 313.82□□□□□ -0.21e-8■■■■■ 160.4
SF3B1O75533 HEXDC-206ENST00000578632 582 ntTSL 413.8□□□□□ -0.21e-8■■■■■ 160.4
SF3B1O75533 HEXDC-209ENST00000581482 553 ntTSL 513.72□□□□□ -0.211e-8■■■■■ 160.4
SF3B1O75533 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC13.7□□□□□ -0.221e-8■■■■■ 160.4
SF3B1O75533 FAM214B-208ENST00000605244 3016 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.221e-8■■■■■ 160.4
SF3B1O75533 SPICE1-201ENST00000295872 5417 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.221e-8■■■■■ 160.4
SF3B1O75533 AL731577.1-201ENST00000449984 830 ntTSL 5 BASIC13.64□□□□□ -0.231e-8■■■■■ 160.4
SF3B1O75533 TMCO6-214ENST00000515653 611 ntTSL 313.64□□□□□ -0.231e-8■■■■■ 160.4
SF3B1O75533 GMPPA-210ENST00000480506 835 ntTSL 513.63□□□□□ -0.231e-8■■■■■ 160.4
SF3B1O75533 FAM214B-205ENST00000488109 2999 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.241e-8■■■■■ 160.4
SF3B1O75533 RNF213-214ENST00000572622 320 ntTSL 313.53□□□□□ -0.241e-8■■■■■ 160.4
SF3B1O75533 UMAD1-205ENST00000493246 570 ntTSL 513.5□□□□□ -0.251e-8■■■■■ 160.4
SF3B1O75533 ADGRV1-207ENST00000508842 582 ntTSL 313.44□□□□□ -0.261e-8■■■■■ 160.4
SF3B1O75533 PPAN-203ENST00000430370 594 ntTSL 313.43□□□□□ -0.261e-8■■■■■ 160.4
SF3B1O75533 SMYD2-206ENST00000491455 3809 ntTSL 213.43□□□□□ -0.261e-8■■■■■ 160.4
SF3B1O75533 PPP6R1-202ENST00000586690 668 ntTSL 213.39□□□□□ -0.271e-8■■■■■ 160.4
SF3B1O75533 FAM214B-204ENST00000378566 2566 ntTSL 2 BASIC13.37□□□□□ -0.271e-8■■■■■ 160.4
SF3B1O75533 WASHC3-212ENST00000544341 945 ntTSL 313.33□□□□□ -0.281e-8■■■■■ 160.4
SF3B1O75533 GMPPA-211ENST00000481170 4942 ntTSL 213.12□□□□□ -0.311e-8■■■■■ 160.4
SF3B1O75533 LPIN1-219ENST00000495907 578 ntTSL 413.12□□□□□ -0.311e-8■■■■■ 160.4
SF3B1O75533 KIF21B-202ENST00000360529 5389 ntTSL 1 (best) BASIC13.1□□□□□ -0.311e-8■■■■■ 160.4
SF3B1O75533 CLPTM1L-212ENST00000511786 559 ntTSL 513.06□□□□□ -0.321e-8■■■■■ 160.4
SF3B1O75533 SLC8B1-205ENST00000548518 664 ntTSL 413.05□□□□□ -0.321e-8■■■■■ 160.4
SF3B1O75533 CPT1A-205ENST00000539743 2382 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.321e-8■■■■■ 160.4
SF3B1O75533 PPIEL-201ENST00000427240 813 ntBASIC13.02□□□□□ -0.331e-8■■■■■ 160.4
SF3B1O75533 ARRDC3-AS1-201ENST00000625713 2500 ntTSL 2 BASIC13.01□□□□□ -0.331e-8■■■■■ 160.4
SF3B1O75533 AC009533.1-201ENST00000539757 3158 ntBASIC12.98□□□□□ -0.331e-8■■■■■ 160.4
SF3B1O75533 KIF21B-204ENST00000461742 5428 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.331e-8■■■■■ 160.4
SF3B1O75533 JMJD6-207ENST00000591460 667 ntTSL 212.91□□□□□ -0.341e-8■■■■■ 160.4
SF3B1O75533 POU2F1-216ENST00000560232 1195 ntTSL 212.86□□□□□ -0.351e-8■■■■■ 160.4
SF3B1O75533 JMJD6-206ENST00000589982 467 ntTSL 212.77□□□□□ -0.371e-8■■■■■ 160.4
SF3B1O75533 RPS6KB1-202ENST00000393021 5479 ntTSL 2 BASIC12.71□□□□□ -0.381e-8■■■■■ 160.4
SF3B1O75533 SPRY2-202ENST00000377104 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.381e-8■■■■■ 160.4
SF3B1O75533 KAZALD1-205ENST00000477979 754 ntTSL 312.57□□□□□ -0.41e-8■■■■■ 160.4
SF3B1O75533 SIL1-208ENST00000505945 250 ntTSL 1 (best)12.56□□□□□ -0.41e-8■■■■■ 160.4
SF3B1O75533 ZSCAN5A-212ENST00000591078 686 ntTSL 312.5□□□□□ -0.411e-8■■■■■ 160.4
SF3B1O75533 LIMCH1-213ENST00000511496 3439 ntTSL 1 (best) BASIC12.49□□□□□ -0.411e-8■■■■■ 160.4
SF3B1O75533 RNF167-202ENST00000570328 298 ntTSL 312.42□□□□□ -0.421e-8■■■■■ 160.4
SF3B1O75533 AP1M1-205ENST00000586543 642 ntTSL 512.4□□□□□ -0.421e-8■■■■■ 160.4
SF3B1O75533 EHMT1-222ENST00000629417 882 ntTSL 312.32□□□□□ -0.441e-8■■■■■ 160.4
SF3B1O75533 ZSCAN5A-205ENST00000587340 2450 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.451e-8■■■■■ 160.4
SF3B1O75533 TMCO6-209ENST00000510336 1953 ntTSL 1 (best)12.26□□□□□ -0.451e-8■■■■■ 160.4
SF3B1O75533 ZSCAN5A-209ENST00000588955 576 ntTSL 412.2□□□□□ -0.461e-8■■■■■ 160.4
SF3B1O75533 LPIN1-203ENST00000396098 1761 ntTSL 1 (best) BASIC12.13□□□□□ -0.471e-8■■■■■ 160.4
SF3B1O75533 GMPPA-206ENST00000435316 786 ntTSL 512.12□□□□□ -0.471e-8■■■■■ 160.4
SF3B1O75533 LIG1-211ENST00000596457 792 ntTSL 512.02□□□□□ -0.491e-8■■■■■ 160.4
SF3B1O75533 RNF167-209ENST00000573404 552 ntTSL 411.94□□□□□ -0.51e-8■■■■■ 160.4
SF3B1O75533 RNF167-208ENST00000572554 501 ntTSL 1 (best)11.94□□□□□ -0.51e-8■■■■■ 160.4
SF3B1O75533 AC004951.2-201ENST00000420754 789 ntBASIC11.86□□□□□ -0.511e-8■■■■■ 160.4
SF3B1O75533 FAM214B-201ENST00000322813 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.511e-8■■■■■ 160.4
SF3B1O75533 PGPEP1-204ENST00000595552 418 ntTSL 211.81□□□□□ -0.521e-8■■■■■ 160.4
SF3B1O75533 LIMCH1-208ENST00000508501 5054 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.521e-8■■■■■ 160.4
SF3B1O75533 LIMCH1-217ENST00000512946 5057 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.521e-8■■■■■ 160.4
SF3B1O75533 GATD1-201ENST00000319863 4357 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.531e-8■■■■■ 160.4
SF3B1O75533 POU2F1-213ENST00000557909 588 ntTSL 411.76□□□□□ -0.531e-8■■■■■ 160.4
SF3B1O75533 LPIN1-206ENST00000423495 477 ntTSL 411.71□□□□□ -0.531e-8■■■■■ 160.4
SF3B1O75533 WASHC3-202ENST00000326351 843 ntTSL 211.7□□□□□ -0.541e-8■■■■■ 160.4
SF3B1O75533 WASHC3-203ENST00000500685 588 ntTSL 311.66□□□□□ -0.541e-8■■■■■ 160.4
SF3B1O75533 CFLAR-222ENST00000474842 1091 ntTSL 1 (best)11.66□□□□□ -0.541e-8■■■■■ 160.4
SF3B1O75533 CFLAR-202ENST00000340870 963 ntTSL 5 BASIC11.65□□□□□ -0.541e-8■■■■■ 160.4
SF3B1O75533 GMPPA-214ENST00000635609 569 ntTSL 511.63□□□□□ -0.551e-8■■■■■ 160.4
SF3B1O75533 CPT1A-206ENST00000540367 2496 ntTSL 1 (best) BASIC11.61□□□□□ -0.551e-8■■■■■ 160.4
SF3B1O75533 POLR2J4-202ENST00000427076 6466 ntTSL 1 (best) BASIC11.61□□□□□ -0.551e-8■■■■■ 160.4
SF3B1O75533 MED30-203ENST00000519879 545 ntTSL 211.46□□□□□ -0.571e-8■■■■■ 160.4
SF3B1O75533 ZSCAN5A-217ENST00000593106 849 ntTSL 511.35□□□□□ -0.591e-8■■■■■ 160.4
SF3B1O75533 PGPEP1-202ENST00000269919 7092 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.631e-8■■■■■ 160.4
SF3B1O75533 AC093152.1-201ENST00000495684 564 ntTSL 5 BASIC11.13□□□□□ -0.631e-8■■■■■ 160.4
SF3B1O75533 SPICE1-205ENST00000495812 568 ntTSL 311.08□□□□□ -0.641e-8■■■■■ 160.4
SF3B1O75533 SH2D6-201ENST00000340326 894 ntTSL 1 (best)10.97□□□□□ -0.651e-8■■■■■ 160.4
SF3B1O75533 CPT1A-201ENST00000265641 5232 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.661e-8■■■■■ 160.4
SF3B1O75533 LIMCH1-205ENST00000503057 5467 ntTSL 1 (best) BASIC10.89□□□□□ -0.671e-8■■■■■ 160.4
SF3B1O75533 GATD1-202ENST00000354286 3973 ntTSL 510.72□□□□□ -0.691e-8■■■■■ 160.4
SF3B1O75533 ZSCAN5A-210ENST00000589279 686 ntTSL 210.62□□□□□ -0.711e-8■■■■■ 160.4
SF3B1O75533 OCRL-204ENST00000486673 942 ntTSL 510.58□□□□□ -0.721e-8■■■■■ 160.4
SF3B1O75533 AL109615.3-201ENST00000422059 2232 ntTSL 2 BASIC10.55□□□□□ -0.721e-8■■■■■ 160.4
SF3B1O75533 FAM214B-207ENST00000605104 561 ntTSL 310.5□□□□□ -0.731e-8■■■■■ 160.4
SF3B1O75533 AL136418.1-201ENST00000551799 975 ntTSL 3 BASIC10.49□□□□□ -0.731e-8■■■■■ 160.4
SF3B1O75533 IREB2-210ENST00000560840 558 ntTSL 510.46□□□□□ -0.731e-8■■■■■ 160.4
SF3B1O75533 LIMCH1-203ENST00000396595 5740 ntTSL 1 (best) BASIC10.39□□□□□ -0.751e-8■■■■■ 160.4
SF3B1O75533 CFLAR-215ENST00000457277 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC10.29□□□□□ -0.761e-8■■■■■ 160.4
SF3B1O75533 RPS6KB1-201ENST00000225577 5375 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.761e-8■■■■■ 160.4
SF3B1O75533 POU2F1-211ENST00000492850 615 ntTSL 510.2□□□□□ -0.781e-8■■■■■ 160.4
SF3B1O75533 TRAK2-201ENST00000332624 6510 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.791e-8■■■■■ 160.4
SF3B1O75533 POU2F1-214ENST00000559038 557 ntTSL 410.04□□□□□ -0.81e-8■■■■■ 160.4
SF3B1O75533 ETV6-205ENST00000545027 652 ntTSL 510□□□□□ -0.811e-8■■■■■ 160.4
SF3B1O75533 TMEM108-211ENST00000515826 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.811e-8■■■■■ 160.4
SF3B1O75533 IREB2-208ENST00000560440 4396 ntTSL 1 (best) BASIC9.94□□□□□ -0.821e-8■■■■■ 160.4
SF3B1O75533 POLR2J4-201ENST00000422304 974 ntTSL 29.9□□□□□ -0.821e-8■■■■■ 160.4
SF3B1O75533 ZSCAN5A-202ENST00000585670 314 ntTSL 39.87□□□□□ -0.831e-8■■■■■ 160.4
SF3B1O75533 LIMCH1-202ENST00000381753 5705 ntTSL 1 (best) BASIC9.77□□□□□ -0.841e-8■■■■■ 160.4
Retrieved 100 of 46,956 protein–RNA pairs in 1452.1 ms