Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
CACNA1FO60840 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CACNA1FO60840 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CACNA1FO60840 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CACNA1FO60840 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CACNA1FO60840 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
CACNA1FO60840 RHEB-204ENST00000472642 900 ntTSL 3 BASIC26.25■■□□□ 1.79
CACNA1FO60840 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC26.25■■□□□ 1.79
CACNA1FO60840 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
CACNA1FO60840 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CACNA1FO60840 KRT17P1-201ENST00000399211 1546 ntBASIC26.25■■□□□ 1.79
CACNA1FO60840 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC26.25■■□□□ 1.79
CACNA1FO60840 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
CACNA1FO60840 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CACNA1FO60840 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CACNA1FO60840 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC26.24■■□□□ 1.79
CACNA1FO60840 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
CACNA1FO60840 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
CACNA1FO60840 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CACNA1FO60840 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CACNA1FO60840 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CACNA1FO60840 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
CACNA1FO60840 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC26.24■■□□□ 1.79
CACNA1FO60840 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CACNA1FO60840 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC26.24■■□□□ 1.79
CACNA1FO60840 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC26.24■■□□□ 1.79
CACNA1FO60840 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CACNA1FO60840 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC26.23■■□□□ 1.79
CACNA1FO60840 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
CACNA1FO60840 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC26.23■■□□□ 1.79
CACNA1FO60840 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CACNA1FO60840 AF106564.1-201ENST00000607058 2553 ntBASIC26.23■■□□□ 1.79
CACNA1FO60840 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC26.23■■□□□ 1.79
CACNA1FO60840 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CACNA1FO60840 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
CACNA1FO60840 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC26.23■■□□□ 1.79
CACNA1FO60840 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC26.23■■□□□ 1.79
CACNA1FO60840 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC26.23■■□□□ 1.79
CACNA1FO60840 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC26.23■■□□□ 1.79
CACNA1FO60840 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC26.23■■□□□ 1.79
CACNA1FO60840 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC26.22■■□□□ 1.79
CACNA1FO60840 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC26.22■■□□□ 1.79
CACNA1FO60840 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CACNA1FO60840 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC26.22■■□□□ 1.79
CACNA1FO60840 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CACNA1FO60840 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CACNA1FO60840 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CACNA1FO60840 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CACNA1FO60840 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC26.22■■□□□ 1.79
CACNA1FO60840 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CACNA1FO60840 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC26.21■■□□□ 1.79
CACNA1FO60840 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
CACNA1FO60840 APTR-205ENST00000447009 902 ntTSL 2 BASIC26.21■■□□□ 1.79
CACNA1FO60840 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC26.21■■□□□ 1.79
CACNA1FO60840 AC091874.3-201ENST00000512672 1195 ntBASIC26.21■■□□□ 1.79
CACNA1FO60840 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
CACNA1FO60840 GCK-205ENST00000437084 1385 ntTSL 5 BASIC26.21■■□□□ 1.79
CACNA1FO60840 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CACNA1FO60840 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CACNA1FO60840 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
CACNA1FO60840 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC26.2■■□□□ 1.79
CACNA1FO60840 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.79
CACNA1FO60840 PPP1R14BP2-201ENST00000426284 444 ntBASIC26.2■■□□□ 1.79
CACNA1FO60840 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC26.2■■□□□ 1.79
CACNA1FO60840 RGMA-211ENST00000557420 989 ntTSL 3 BASIC26.2■■□□□ 1.79
CACNA1FO60840 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.79
CACNA1FO60840 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC26.2■■□□□ 1.79
CACNA1FO60840 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.78
CACNA1FO60840 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC26.2■■□□□ 1.78
CACNA1FO60840 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CACNA1FO60840 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CACNA1FO60840 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC26.2■■□□□ 1.78
CACNA1FO60840 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC26.2■■□□□ 1.78
CACNA1FO60840 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC26.2■■□□□ 1.78
CACNA1FO60840 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
CACNA1FO60840 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC26.2■■□□□ 1.78
CACNA1FO60840 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CACNA1FO60840 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC26.2■■□□□ 1.78
CACNA1FO60840 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
CACNA1FO60840 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC26.19■■□□□ 1.78
CACNA1FO60840 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC26.19■■□□□ 1.78
CACNA1FO60840 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CACNA1FO60840 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
CACNA1FO60840 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CACNA1FO60840 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC26.19■■□□□ 1.78
CACNA1FO60840 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC26.19■■□□□ 1.78
CACNA1FO60840 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC26.19■■□□□ 1.78
CACNA1FO60840 AC092118.2-201ENST00000613495 667 ntBASIC26.19■■□□□ 1.78
CACNA1FO60840 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
CACNA1FO60840 CYP21A1P-202ENST00000354927 1481 ntBASIC26.19■■□□□ 1.78
CACNA1FO60840 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
CACNA1FO60840 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CACNA1FO60840 AC011484.1-201ENST00000377652 1995 ntBASIC26.19■■□□□ 1.78
CACNA1FO60840 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CACNA1FO60840 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC26.18■■□□□ 1.78
CACNA1FO60840 SERPINH1P1-201ENST00000419794 1249 ntBASIC26.18■■□□□ 1.78
CACNA1FO60840 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CACNA1FO60840 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
CACNA1FO60840 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
CACNA1FO60840 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms