Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CACNA1AO00555 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CACNA1AO00555 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CACNA1AO00555 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CACNA1AO00555 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CACNA1AO00555 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CACNA1AO00555 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CACNA1AO00555 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CACNA1AO00555 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CACNA1AO00555 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.8■□□□□ 0.76
CACNA1AO00555 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CACNA1AO00555 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CACNA1AO00555 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CACNA1AO00555 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CACNA1AO00555 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC19.8■□□□□ 0.76
CACNA1AO00555 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.8■□□□□ 0.76
CACNA1AO00555 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC19.8■□□□□ 0.76
CACNA1AO00555 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.8■□□□□ 0.76
CACNA1AO00555 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CACNA1AO00555 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CACNA1AO00555 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.8■□□□□ 0.76
CACNA1AO00555 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.79■□□□□ 0.76
CACNA1AO00555 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.79■□□□□ 0.76
CACNA1AO00555 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC19.79■□□□□ 0.76
CACNA1AO00555 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC19.79■□□□□ 0.76
CACNA1AO00555 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1AO00555 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1AO00555 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1AO00555 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CACNA1AO00555 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1AO00555 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC19.79■□□□□ 0.76
CACNA1AO00555 AC005829.2-201ENST00000571422 1056 ntBASIC19.79■□□□□ 0.76
CACNA1AO00555 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1AO00555 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.79■□□□□ 0.76
CACNA1AO00555 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1AO00555 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1AO00555 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1AO00555 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1AO00555 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CACNA1AO00555 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.78■□□□□ 0.76
CACNA1AO00555 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.78■□□□□ 0.76
CACNA1AO00555 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1AO00555 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1AO00555 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC19.78■□□□□ 0.76
CACNA1AO00555 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1AO00555 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.78■□□□□ 0.76
CACNA1AO00555 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1AO00555 FAM207BP-201ENST00000447172 505 ntBASIC19.78■□□□□ 0.76
CACNA1AO00555 AL121956.5-201ENST00000625261 221 ntBASIC19.78■□□□□ 0.76
CACNA1AO00555 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1AO00555 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1AO00555 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1AO00555 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
CACNA1AO00555 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.77■□□□□ 0.76
CACNA1AO00555 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.77■□□□□ 0.76
CACNA1AO00555 KLK8-205ENST00000593490 267 ntTSL 3 BASIC19.77■□□□□ 0.76
CACNA1AO00555 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
CACNA1AO00555 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.77■□□□□ 0.76
CACNA1AO00555 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
CACNA1AO00555 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CACNA1AO00555 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CACNA1AO00555 HMGN1P19-201ENST00000436976 333 ntBASIC19.76■□□□□ 0.75
CACNA1AO00555 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CACNA1AO00555 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CACNA1AO00555 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.76■□□□□ 0.75
CACNA1AO00555 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CACNA1AO00555 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CACNA1AO00555 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CACNA1AO00555 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
CACNA1AO00555 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.76■□□□□ 0.75
CACNA1AO00555 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CACNA1AO00555 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CACNA1AO00555 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CACNA1AO00555 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.76■□□□□ 0.75
CACNA1AO00555 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CACNA1AO00555 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.75■□□□□ 0.75
CACNA1AO00555 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CACNA1AO00555 ATP5G1P1-201ENST00000448724 379 ntBASIC19.75■□□□□ 0.75
CACNA1AO00555 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.75■□□□□ 0.75
CACNA1AO00555 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.75■□□□□ 0.75
CACNA1AO00555 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CACNA1AO00555 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.75■□□□□ 0.75
CACNA1AO00555 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.75■□□□□ 0.75
CACNA1AO00555 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CACNA1AO00555 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.75■□□□□ 0.75
CACNA1AO00555 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.75■□□□□ 0.75
CACNA1AO00555 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CACNA1AO00555 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.75■□□□□ 0.75
CACNA1AO00555 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
CACNA1AO00555 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CACNA1AO00555 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CACNA1AO00555 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.74■□□□□ 0.75
CACNA1AO00555 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CACNA1AO00555 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.74■□□□□ 0.75
CACNA1AO00555 AC116562.2-201ENST00000507042 360 ntBASIC19.74■□□□□ 0.75
CACNA1AO00555 AC010203.1-204ENST00000548782 407 ntBASIC19.74■□□□□ 0.75
CACNA1AO00555 AC116407.4-201ENST00000623319 1061 ntBASIC19.74■□□□□ 0.75
CACNA1AO00555 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CACNA1AO00555 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CACNA1AO00555 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms