Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RHBDD3Q9Y3P4 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.12■□□□□ 0.49
RHBDD3Q9Y3P4 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RHBDD3Q9Y3P4 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RHBDD3Q9Y3P4 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 AC092667.1-201ENST00000434301 2586 ntBASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 AP005212.1-201ENST00000581547 1997 ntBASIC18.1■□□□□ 0.49
RHBDD3Q9Y3P4 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 PLK5-205ENST00000642079 1969 ntBASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
RHBDD3Q9Y3P4 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.08■□□□□ 0.49
RHBDD3Q9Y3P4 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC18.08■□□□□ 0.49
RHBDD3Q9Y3P4 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.08■□□□□ 0.49
RHBDD3Q9Y3P4 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.08■□□□□ 0.49
RHBDD3Q9Y3P4 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
RHBDD3Q9Y3P4 GABARAPL3-202ENST00000624044 1851 ntBASIC18.08■□□□□ 0.49
RHBDD3Q9Y3P4 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RHBDD3Q9Y3P4 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC18.08■□□□□ 0.48
RHBDD3Q9Y3P4 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
RHBDD3Q9Y3P4 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.08■□□□□ 0.48
RHBDD3Q9Y3P4 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RHBDD3Q9Y3P4 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.08■□□□□ 0.48
RHBDD3Q9Y3P4 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RHBDD3Q9Y3P4 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
RHBDD3Q9Y3P4 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RHBDD3Q9Y3P4 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
RHBDD3Q9Y3P4 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
RHBDD3Q9Y3P4 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms