Protein–RNA interactions for Protein: Q9Y3B2

EXOSC1, Exosome complex component CSL4, humanhuman

Known RBP Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC1Q9Y3B2 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
EXOSC1Q9Y3B2 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
EXOSC1Q9Y3B2 FP700111.2-201ENST00000619190 1892 ntBASIC18.54■□□□□ 0.56
EXOSC1Q9Y3B2 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
EXOSC1Q9Y3B2 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18.54■□□□□ 0.56
EXOSC1Q9Y3B2 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
EXOSC1Q9Y3B2 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
EXOSC1Q9Y3B2 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 SRD5A1P1-201ENST00000442297 786 ntBASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 RNF165-205ENST00000588679 2904 ntBASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
EXOSC1Q9Y3B2 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
EXOSC1Q9Y3B2 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.52■□□□□ 0.56
EXOSC1Q9Y3B2 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.52■□□□□ 0.56
EXOSC1Q9Y3B2 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
EXOSC1Q9Y3B2 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
EXOSC1Q9Y3B2 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.52■□□□□ 0.56
EXOSC1Q9Y3B2 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
EXOSC1Q9Y3B2 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC18.52■□□□□ 0.56
EXOSC1Q9Y3B2 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.52■□□□□ 0.56
EXOSC1Q9Y3B2 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
EXOSC1Q9Y3B2 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
EXOSC1Q9Y3B2 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
EXOSC1Q9Y3B2 AC099778.1-201ENST00000568593 1911 ntBASIC18.52■□□□□ 0.56
EXOSC1Q9Y3B2 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
EXOSC1Q9Y3B2 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.52■□□□□ 0.55
EXOSC1Q9Y3B2 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
EXOSC1Q9Y3B2 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.52■□□□□ 0.55
EXOSC1Q9Y3B2 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 HES6-206ENST00000409574 738 ntTSL 2 BASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 KRT16P3-201ENST00000439127 1283 ntBASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 CREM-229ENST00000474362 1030 ntTSL 2 BASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 AC009299.2-201ENST00000482477 511 ntBASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
EXOSC1Q9Y3B2 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
EXOSC1Q9Y3B2 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
EXOSC1Q9Y3B2 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
EXOSC1Q9Y3B2 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
EXOSC1Q9Y3B2 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
EXOSC1Q9Y3B2 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
EXOSC1Q9Y3B2 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
EXOSC1Q9Y3B2 PTCHD3P2-201ENST00000424937 1205 ntBASIC18.5■□□□□ 0.55
EXOSC1Q9Y3B2 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
EXOSC1Q9Y3B2 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.5■□□□□ 0.55
EXOSC1Q9Y3B2 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
EXOSC1Q9Y3B2 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
EXOSC1Q9Y3B2 AL138724.1-201ENST00000606771 1088 ntBASIC18.5■□□□□ 0.55
EXOSC1Q9Y3B2 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
EXOSC1Q9Y3B2 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
EXOSC1Q9Y3B2 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
EXOSC1Q9Y3B2 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
EXOSC1Q9Y3B2 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
EXOSC1Q9Y3B2 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
EXOSC1Q9Y3B2 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
EXOSC1Q9Y3B2 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
EXOSC1Q9Y3B2 AC112907.3-201ENST00000577781 2400 ntBASIC18.49■□□□□ 0.55
EXOSC1Q9Y3B2 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
EXOSC1Q9Y3B2 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
EXOSC1Q9Y3B2 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC18.49■□□□□ 0.55
EXOSC1Q9Y3B2 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC18.49■□□□□ 0.55
EXOSC1Q9Y3B2 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.49■□□□□ 0.55
EXOSC1Q9Y3B2 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
EXOSC1Q9Y3B2 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.49■□□□□ 0.55
EXOSC1Q9Y3B2 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms