Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS29Q9UBQ0 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 LINC01006-201ENST00000333319 2292 ntBASIC19.85■□□□□ 0.77
VPS29Q9UBQ0 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 KRT18P14-201ENST00000534205 1250 ntBASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 AP001160.3-201ENST00000601484 763 ntBASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS29Q9UBQ0 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS29Q9UBQ0 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS29Q9UBQ0 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS29Q9UBQ0 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS29Q9UBQ0 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS29Q9UBQ0 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
VPS29Q9UBQ0 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
VPS29Q9UBQ0 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.83■□□□□ 0.77
VPS29Q9UBQ0 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.83■□□□□ 0.77
VPS29Q9UBQ0 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.83■□□□□ 0.77
VPS29Q9UBQ0 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.83■□□□□ 0.77
VPS29Q9UBQ0 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.83■□□□□ 0.76
VPS29Q9UBQ0 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
VPS29Q9UBQ0 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS29Q9UBQ0 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS29Q9UBQ0 AC007225.1-201ENST00000566331 1836 ntBASIC19.83■□□□□ 0.76
VPS29Q9UBQ0 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS29Q9UBQ0 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS29Q9UBQ0 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS29Q9UBQ0 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
VPS29Q9UBQ0 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS29Q9UBQ0 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS29Q9UBQ0 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS29Q9UBQ0 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS29Q9UBQ0 AC245052.3-201ENST00000450182 901 ntBASIC19.82■□□□□ 0.76
VPS29Q9UBQ0 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS29Q9UBQ0 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.82■□□□□ 0.76
VPS29Q9UBQ0 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS29Q9UBQ0 RARRES2P11-201ENST00000635158 484 ntBASIC19.82■□□□□ 0.76
VPS29Q9UBQ0 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS29Q9UBQ0 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS29Q9UBQ0 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS29Q9UBQ0 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS29Q9UBQ0 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS29Q9UBQ0 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS29Q9UBQ0 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS29Q9UBQ0 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS29Q9UBQ0 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS29Q9UBQ0 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.81■□□□□ 0.76
VPS29Q9UBQ0 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS29Q9UBQ0 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS29Q9UBQ0 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS29Q9UBQ0 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS29Q9UBQ0 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.81■□□□□ 0.76
VPS29Q9UBQ0 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS29Q9UBQ0 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS29Q9UBQ0 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
VPS29Q9UBQ0 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.81■□□□□ 0.76
VPS29Q9UBQ0 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms