Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.36■□□□□ 0.69
VCX3AQ9NNX9 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCX3AQ9NNX9 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCX3AQ9NNX9 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCX3AQ9NNX9 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC19.36■□□□□ 0.69
VCX3AQ9NNX9 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.36■□□□□ 0.69
VCX3AQ9NNX9 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCX3AQ9NNX9 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCX3AQ9NNX9 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCX3AQ9NNX9 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCX3AQ9NNX9 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
VCX3AQ9NNX9 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.36■□□□□ 0.69
VCX3AQ9NNX9 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCX3AQ9NNX9 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VCX3AQ9NNX9 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
VCX3AQ9NNX9 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCX3AQ9NNX9 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCX3AQ9NNX9 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.34■□□□□ 0.69
VCX3AQ9NNX9 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.34■□□□□ 0.69
VCX3AQ9NNX9 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCX3AQ9NNX9 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCX3AQ9NNX9 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
VCX3AQ9NNX9 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VCX3AQ9NNX9 IDNK-203ENST00000405990 629 ntTSL 2 BASIC19.34■□□□□ 0.69
VCX3AQ9NNX9 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCX3AQ9NNX9 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
VCX3AQ9NNX9 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCX3AQ9NNX9 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCX3AQ9NNX9 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC19.34■□□□□ 0.69
VCX3AQ9NNX9 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCX3AQ9NNX9 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCX3AQ9NNX9 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
VCX3AQ9NNX9 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VCX3AQ9NNX9 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
VCX3AQ9NNX9 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VCX3AQ9NNX9 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VCX3AQ9NNX9 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VCX3AQ9NNX9 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCX3AQ9NNX9 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC19.33■□□□□ 0.68
VCX3AQ9NNX9 AC016575.1-201ENST00000607026 382 ntBASIC19.33■□□□□ 0.68
VCX3AQ9NNX9 AC133552.2-201ENST00000619106 1032 ntBASIC19.33■□□□□ 0.68
VCX3AQ9NNX9 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
VCX3AQ9NNX9 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.33■□□□□ 0.68
VCX3AQ9NNX9 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.33■□□□□ 0.68
VCX3AQ9NNX9 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.33■□□□□ 0.68
VCX3AQ9NNX9 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCX3AQ9NNX9 BCL2-203ENST00000589955 5011 ntBASIC19.33■□□□□ 0.68
VCX3AQ9NNX9 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCX3AQ9NNX9 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC19.33■□□□□ 0.68
VCX3AQ9NNX9 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCX3AQ9NNX9 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCX3AQ9NNX9 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
VCX3AQ9NNX9 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
VCX3AQ9NNX9 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3AQ9NNX9 AC009831.1-201ENST00000580420 1582 ntBASIC19.32■□□□□ 0.68
VCX3AQ9NNX9 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3AQ9NNX9 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3AQ9NNX9 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3AQ9NNX9 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3AQ9NNX9 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3AQ9NNX9 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3AQ9NNX9 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3AQ9NNX9 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3AQ9NNX9 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3AQ9NNX9 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
VCX3AQ9NNX9 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCX3AQ9NNX9 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.32■□□□□ 0.68
VCX3AQ9NNX9 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCX3AQ9NNX9 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.31■□□□□ 0.68
VCX3AQ9NNX9 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCX3AQ9NNX9 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.31■□□□□ 0.68
VCX3AQ9NNX9 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCX3AQ9NNX9 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCX3AQ9NNX9 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCX3AQ9NNX9 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
VCX3AQ9NNX9 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms