Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 AC100791.3-201ENST00000617619 330 ntBASIC21.56■■□□□ 1.04
RNF38Q9H0F5 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RNF38Q9H0F5 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RNF38Q9H0F5 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
RNF38Q9H0F5 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.55■■□□□ 1.04
RNF38Q9H0F5 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RNF38Q9H0F5 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RNF38Q9H0F5 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21.55■■□□□ 1.04
RNF38Q9H0F5 CYP2T3P-201ENST00000601990 817 ntBASIC21.55■■□□□ 1.04
RNF38Q9H0F5 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RNF38Q9H0F5 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.55■■□□□ 1.04
RNF38Q9H0F5 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RNF38Q9H0F5 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.55■■□□□ 1.04
RNF38Q9H0F5 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RNF38Q9H0F5 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RNF38Q9H0F5 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
RNF38Q9H0F5 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.55■■□□□ 1.04
RNF38Q9H0F5 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RNF38Q9H0F5 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.55■■□□□ 1.04
RNF38Q9H0F5 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
RNF38Q9H0F5 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.54■■□□□ 1.04
RNF38Q9H0F5 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC21.54■■□□□ 1.04
RNF38Q9H0F5 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RNF38Q9H0F5 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RNF38Q9H0F5 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
RNF38Q9H0F5 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC21.54■■□□□ 1.04
RNF38Q9H0F5 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
RNF38Q9H0F5 LSM12P1-201ENST00000411836 588 ntBASIC21.54■■□□□ 1.04
RNF38Q9H0F5 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.54■■□□□ 1.04
RNF38Q9H0F5 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.54■■□□□ 1.04
RNF38Q9H0F5 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC21.54■■□□□ 1.04
RNF38Q9H0F5 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.54■■□□□ 1.04
RNF38Q9H0F5 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RNF38Q9H0F5 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.54■■□□□ 1.04
RNF38Q9H0F5 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
RNF38Q9H0F5 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
RNF38Q9H0F5 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RNF38Q9H0F5 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RNF38Q9H0F5 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.53■■□□□ 1.04
RNF38Q9H0F5 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RNF38Q9H0F5 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.53■■□□□ 1.04
RNF38Q9H0F5 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RNF38Q9H0F5 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RNF38Q9H0F5 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC21.53■■□□□ 1.04
RNF38Q9H0F5 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC21.53■■□□□ 1.04
RNF38Q9H0F5 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.53■■□□□ 1.04
RNF38Q9H0F5 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RNF38Q9H0F5 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RNF38Q9H0F5 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.53■■□□□ 1.04
RNF38Q9H0F5 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.53■■□□□ 1.04
RNF38Q9H0F5 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RNF38Q9H0F5 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.53■■□□□ 1.04
RNF38Q9H0F5 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
RNF38Q9H0F5 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.53■■□□□ 1.04
RNF38Q9H0F5 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RNF38Q9H0F5 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
RNF38Q9H0F5 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.52■■□□□ 1.03
RNF38Q9H0F5 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
RNF38Q9H0F5 AC116050.2-201ENST00000612102 1779 ntBASIC21.51■■□□□ 1.03
RNF38Q9H0F5 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RNF38Q9H0F5 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF38Q9H0F5 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF38Q9H0F5 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF38Q9H0F5 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
RNF38Q9H0F5 MCRIP2P1-201ENST00000394346 511 ntBASIC21.51■■□□□ 1.03
RNF38Q9H0F5 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC21.51■■□□□ 1.03
RNF38Q9H0F5 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.51■■□□□ 1.03
RNF38Q9H0F5 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF38Q9H0F5 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
RNF38Q9H0F5 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF38Q9H0F5 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.51■■□□□ 1.03
RNF38Q9H0F5 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF38Q9H0F5 FBXW4P1-201ENST00000426721 2239 ntBASIC21.51■■□□□ 1.03
RNF38Q9H0F5 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF38Q9H0F5 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
RNF38Q9H0F5 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF38Q9H0F5 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RNF38Q9H0F5 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.5■■□□□ 1.03
RNF38Q9H0F5 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.5■■□□□ 1.03
RNF38Q9H0F5 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms