Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC27.5■■□□□ 1.99
USHBP1Q8N6Y0 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC27.5■■□□□ 1.99
USHBP1Q8N6Y0 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC27.5■■□□□ 1.99
USHBP1Q8N6Y0 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
USHBP1Q8N6Y0 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC27.5■■□□□ 1.99
USHBP1Q8N6Y0 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC27.5■■□□□ 1.99
USHBP1Q8N6Y0 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
USHBP1Q8N6Y0 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
USHBP1Q8N6Y0 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
USHBP1Q8N6Y0 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
USHBP1Q8N6Y0 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
USHBP1Q8N6Y0 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
USHBP1Q8N6Y0 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
USHBP1Q8N6Y0 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC27.49■■□□□ 1.99
USHBP1Q8N6Y0 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC27.49■■□□□ 1.99
USHBP1Q8N6Y0 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC27.49■■□□□ 1.99
USHBP1Q8N6Y0 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC27.49■■□□□ 1.99
USHBP1Q8N6Y0 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
USHBP1Q8N6Y0 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
USHBP1Q8N6Y0 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC27.49■■□□□ 1.99
USHBP1Q8N6Y0 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
USHBP1Q8N6Y0 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC27.49■■□□□ 1.99
USHBP1Q8N6Y0 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC27.49■■□□□ 1.99
USHBP1Q8N6Y0 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 AC008550.1-201ENST00000511500 884 ntBASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 SOX15-203ENST00000570788 1093 ntBASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC27.48■■□□□ 1.99
USHBP1Q8N6Y0 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC27.47■■□□□ 1.99
USHBP1Q8N6Y0 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC27.47■■□□□ 1.99
USHBP1Q8N6Y0 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC27.47■■□□□ 1.99
USHBP1Q8N6Y0 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
USHBP1Q8N6Y0 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
USHBP1Q8N6Y0 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
USHBP1Q8N6Y0 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC27.47■■□□□ 1.99
USHBP1Q8N6Y0 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC27.47■■□□□ 1.99
USHBP1Q8N6Y0 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC27.47■■□□□ 1.99
USHBP1Q8N6Y0 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC27.47■■□□□ 1.99
USHBP1Q8N6Y0 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC27.47■■□□□ 1.99
USHBP1Q8N6Y0 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
USHBP1Q8N6Y0 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
USHBP1Q8N6Y0 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC27.47■■□□□ 1.99
USHBP1Q8N6Y0 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
USHBP1Q8N6Y0 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC27.46■■□□□ 1.99
USHBP1Q8N6Y0 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC27.46■■□□□ 1.99
USHBP1Q8N6Y0 MME-217ENST00000616757 1315 ntTSL 5 BASIC27.46■■□□□ 1.99
USHBP1Q8N6Y0 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
USHBP1Q8N6Y0 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC27.46■■□□□ 1.99
USHBP1Q8N6Y0 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
USHBP1Q8N6Y0 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
USHBP1Q8N6Y0 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC27.46■■□□□ 1.99
USHBP1Q8N6Y0 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC27.46■■□□□ 1.99
USHBP1Q8N6Y0 C1QBPP2-201ENST00000528754 825 ntBASIC27.46■■□□□ 1.99
USHBP1Q8N6Y0 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC27.46■■□□□ 1.99
USHBP1Q8N6Y0 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC27.46■■□□□ 1.99
USHBP1Q8N6Y0 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
USHBP1Q8N6Y0 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC27.46■■□□□ 1.99
USHBP1Q8N6Y0 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC27.45■■□□□ 1.99
USHBP1Q8N6Y0 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC27.45■■□□□ 1.99
USHBP1Q8N6Y0 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC27.45■■□□□ 1.98
USHBP1Q8N6Y0 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC27.45■■□□□ 1.98
USHBP1Q8N6Y0 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC27.45■■□□□ 1.98
USHBP1Q8N6Y0 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC27.45■■□□□ 1.98
USHBP1Q8N6Y0 RPPH1-201ENST00000516869 333 ntBASIC27.45■■□□□ 1.98
USHBP1Q8N6Y0 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC27.45■■□□□ 1.98
USHBP1Q8N6Y0 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
USHBP1Q8N6Y0 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC27.45■■□□□ 1.98
USHBP1Q8N6Y0 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
USHBP1Q8N6Y0 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC27.44■■□□□ 1.98
USHBP1Q8N6Y0 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
USHBP1Q8N6Y0 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC27.44■■□□□ 1.98
USHBP1Q8N6Y0 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC27.44■■□□□ 1.98
USHBP1Q8N6Y0 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC27.44■■□□□ 1.98
USHBP1Q8N6Y0 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC27.44■■□□□ 1.98
USHBP1Q8N6Y0 AC105020.6-201ENST00000621523 1217 ntBASIC27.44■■□□□ 1.98
USHBP1Q8N6Y0 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC27.44■■□□□ 1.98
USHBP1Q8N6Y0 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
USHBP1Q8N6Y0 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC27.44■■□□□ 1.98
USHBP1Q8N6Y0 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC27.44■■□□□ 1.98
USHBP1Q8N6Y0 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC27.44■■□□□ 1.98
USHBP1Q8N6Y0 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
USHBP1Q8N6Y0 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
USHBP1Q8N6Y0 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms